# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	1.30e-11	d.98.1.1	67267
2g2uB	165	1.62e-11	d.98.1.1	134541
1dliA	402	10.66	a.100.1.4,c.2.1.6,c.26.3.1	18809,30213,31622
2o8xA	70	14.25		
2oxgB	124	14.77		
2ho3A	325	14.90		
2fbhA	146	16.56	a.4.5.28	133245
2h27A	73	17.75	a.4.13.2	135993
2cx5A	158	19.12		
1t6sA	162	20.90	a.4.5.60,a.4.5.60	112271,112272
2grjA	192	21.19		
1j3wA	163	22.66	d.110.7.1	90833
1wdcB	156	22.91	a.39.1.5	17302
2pliA	91	24.88		
2a0mA	316	25.84	c.42.1.1	125960
1z82A	335	27.06		
1ku3A	73	27.94	a.4.13.2	73000
3bemA	218	28.82		
2f6rA	281	28.97		
2ef5A	290	30.55		
1mpyA	307	30.64	d.32.1.3,d.32.1.3	38508,38509
2r7dA	469	32.29		
2z0xA	158	33.62		
2iskA	230	34.49		
1vjfA	180	34.55	d.116.1.1	100809
1u6eA	335	36.31	c.95.1.2,c.95.1.2	119568,119569
1wrjA	156	36.66		
1o1zA	234	40.15	c.1.18.3	86555
1v4sA	455	45.86	c.55.1.3,c.55.1.3	100309,100310
1vd6A	224	48.76	c.1.18.3	119991
1f5vA	240	49.20	d.90.1.1	40255
1ywqA	200	49.63	d.90.1.1	124162
1zh8A	340	51.47	c.2.1.3,d.81.1.5	125077,125078
2c8mA	262	54.20		
1vhtA	218	55.75	c.37.1.1	100700
2h36X	112	55.78		
2qdrA	303	56.74		
1gq6A	313	56.78	c.42.1.1	70341
2hmaA	376	57.09		
1f1uA	323	59.00	d.32.1.3,d.32.1.3	83200,83201
1ykiA	217	60.15	d.90.1.1	123520
2qhkA	174	60.63		
1rw1A	114	61.04	c.47.1.12	111945
2q88A	257	61.10		
2p13A	90	61.35		
2jerA	389	62.02		
1wdvA	152	62.54	d.116.1.1	114539
2ja9A	175	64.64		
1tltA	319	65.08	c.2.1.3,d.81.1.5	107135,107136
1tu3F	79	66.08	h.1.27.2	112644
2bzeA	153	66.22		
2cr5A	109	67.17	d.15.1.2	130733
2freA	200	69.48	d.90.1.1	133985
1a8yA	367	73.91	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
1luzA	88	74.10	b.40.4.5	74271
2r1fA	270	74.87		
1noxA	205	76.02	d.90.1.1	40242
2dxaA	166	77.88		
1zchA	255	78.99	d.90.1.1	124908
2ghpA	292	80.20	d.58.7.1,d.58.7.1,d.58.7.1	135184,135185,135186
2guzA	71	80.51		
1ituA	369	81.35	c.1.9.7	71423
2glxA	332	81.48		
1rxwA	336	81.53	a.60.7.1,c.120.1.2	98059,98060
2hy5A	130	82.65	c.114.1.1	136865
1z6fA	363	83.25	b.105.1.1,e.3.1.1	124520,124521
2q6mA	212	83.89		
1bkjA	240	84.16	d.90.1.1	40243
2o1rA	81	85.11		
1f1xA	322	86.39	d.32.1.3,d.32.1.3	83208,83209
1vs0A	310	89.89