# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2g2uB 165 1.38e-11 d.98.1.1 134541 1jtgB 165 2.35e-11 d.98.1.1 67267 3coxA 507 1.737 c.3.1.2,d.16.1.1 30332,37863 2p8bA 369 2.565 1w0pA 781 2.879 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1tltA 319 3.833 c.2.1.3,d.81.1.5 107135,107136 1bu6O 501 4.167 c.55.1.4,c.55.1.4 33499,33500 2obhA 143 4.529 1n4wA 504 4.962 c.3.1.2,d.16.1.1 91676,91677 1v7wA 807 5.498 a.102.1.4,b.30.5.3 108411,108412 2qdrA 303 6.577 1nrwA 288 6.668 c.108.1.10 86128 2z0xA 158 6.739 1r17A 343 7.554 b.2.3.4,b.2.3.4 96796,96797 2ghpA 292 9.129 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 2dkhA 639 9.196 1aosA 464 10.33 a.127.1.1 19414 1v4vA 376 10.42 c.87.1.3 100313 1ojjA 402 10.77 b.29.1.10 93130 1z82A 335 10.84 1mtyD 512 11.99 a.25.1.2 16742 1f1uA 323 12.64 d.32.1.3,d.32.1.3 83200,83201 1ek6A 348 13.03 c.2.1.2 29800 2oxgB 124 14.14 1xesA 413 14.89 1yewA 382 15.52 1vjfA 180 15.95 d.116.1.1 100809 1w85A 368 17.35 c.36.1.11 114335 2fbhA 146 21.06 a.4.5.28 133245 2q4aA 330 24.66 b.82.2.8 139839 1ggzA 148 25.74 a.39.1.5 70176 2o5gA 148 25.92 2c1xA 456 26.47 2pyxA 526 26.58 2r01A 210 26.75 2f7lA 455 27.87 1vd6A 224 28.05 c.1.18.3 119991 2boqA 331 28.57 1u6eA 335 30.94 c.95.1.2,c.95.1.2 119568,119569 3boqA 160 31.02 1j3wA 163 31.34 d.110.7.1 90833 1b7yB 785 32.18 a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,b.153.1.1 16301,16302,25312,39311,40780,41456 1r13A 148 33.55 d.169.1.1,h.1.1.1 96782,96783 2hi2A 158 33.98 2cx5A 158 34.44 1peqA 714 34.72 a.98.1.1,c.7.1.2 104131,104132 1yhtA 367 35.35 c.1.8.6 123213 1b63A 333 35.72 d.14.1.3,d.122.1.2 37566,41107 2cvzA 289 36.00 a.100.1.1,c.2.1.6 130890,130891 2gu1A 361 36.16 2z1mA 345 36.24 2ad6A 571 36.99 b.70.1.1 126568 1kjqA 391 38.09 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2i3oA 516 38.27 d.153.1.6 137027 1h6vA 499 38.89 c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 2qvwA 756 38.96 2o8xA 70 39.08 2r7dA 469 40.08 2awpA 198 40.95 1y0zA 330 41.38 b.82.2.8 116317 2gf3A 389 42.34 c.3.1.2,d.16.1.3 135070,135071 2nu8B 388 43.01 1ztuA 341 43.39 1eg5A 384 43.45 c.67.1.3 34429 2h27A 73 44.26 a.4.13.2 135993 1phkA 298 44.66 d.144.1.7 41635 1gvjA 146 45.15 a.4.5.21 90525 2bv6A 142 47.55 1udcA 338 47.55 c.2.1.2 29785 2b67A 204 47.66 d.90.1.1 127970 2pliA 91 47.93 2hmaA 376 48.01 1oacA 727 49.50 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1wdcB 156 51.54 a.39.1.5 17302 3bemA 218 51.85 2e18A 257 51.93 2p2sA 336 52.73 1hnjA 317 53.01 c.95.1.2,c.95.1.2 35969,35970 1f46A 140 54.07 d.129.4.1 59643 2dnjA 260 55.50 d.151.1.1 41790 1f5vA 240 55.73 d.90.1.1 40255 1pn0A 665 56.33 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1f1xA 322 56.36 d.32.1.3,d.32.1.3 83208,83209 3bi1A 709 56.85 1nw1A 429 57.69 d.144.1.8 86286 1k0wA 231 59.86 c.74.1.1 77220 2rh1A 500 61.73 2chuA 296 61.90 c.92.2.4 130485 2a2cA 478 62.10 2f6rA 281 62.41 1my6A 199 62.64 a.2.11.1,d.44.1.1 85232,85233 2pdrA 149 63.81 2btzA 394 66.65 2cmuA 342 67.03 1enfA 212 67.62 b.40.2.2,d.15.6.1 25198,37787 2grjA 192 68.26 1wrjA 156 68.61 2iskA 230 69.12 2gv5A 161 69.26 1ru3A 732 69.81 e.26.1.3 97835 2bl0C 142 70.09 1tuoA 464 70.37 1p2fA 220 72.02 a.4.6.1,c.23.1.1 87720,87721 1f0xA 571 72.34 d.58.32.2,d.145.1.1 39483,41746 2e58A 308 72.37 1vjpA 394 76.11 c.2.1.3,d.81.1.3 100828,100829 1a76 326 77.26 1u04A 771 78.35 b.34.14.1,c.55.3.10 107539,107540 1qlwA 328 81.29 c.69.1.15 34722 1t6sA 162 81.35 a.4.5.60,a.4.5.60 112271,112272 2o9cA 342 81.93 2h1yA 321 82.08 2d1pA 140 84.81 c.114.1.1 131136 1qw2A 102 85.42 d.249.1.1 96456 2imhA 231 85.55 1zrnA 232 86.96 c.108.1.1 43323 1rw1A 114 87.60 c.47.1.12 111945 2airB 153 89.25 d.58.2.1,g.41.7.1 126832,126833