# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	5.61e-12	d.98.1.1	67267
2g2uB	165	7.10e-12	d.98.1.1	134541
1u6eA	335	5.515	c.95.1.2,c.95.1.2	119568,119569
1dliA	402	12.32	a.100.1.4,c.2.1.6,c.26.3.1	18809,30213,31622
2ho3A	325	15.53		
2fbhA	146	16.23	a.4.5.28	133245
2hmaA	376	16.88		
2o8xA	70	17.17		
2h27A	73	18.31	a.4.13.2	135993
2grjA	192	20.86		
2oxgB	124	21.30		
2cx5A	158	21.31		
1wdcB	156	22.19	a.39.1.5	17302
2ghpA	292	23.48	d.58.7.1,d.58.7.1,d.58.7.1	135184,135185,135186
1z82A	335	24.24		
2pliA	91	24.44		
2a0mA	316	29.35	c.42.1.1	125960
2ja9A	175	30.28		
1vjfA	180	30.69	d.116.1.1	100809
2f6rA	281	32.66		
1gq6A	313	33.33	c.42.1.1	70341
1t6sA	162	33.97	a.4.5.60,a.4.5.60	112271,112272
3bemA	218	36.05		
2z0xA	158	37.64		
1j3wA	163	37.72	d.110.7.1	90833
1qlwA	328	40.81	c.69.1.15	34722
2qdrA	303	41.24		
1a8yA	367	41.50	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
1f5vA	240	41.50	d.90.1.1	40255
1vhtA	218	42.43	c.37.1.1	100700
1rw1A	114	42.50	c.47.1.12	111945
1v4sA	455	42.78	c.55.1.3,c.55.1.3	100309,100310
2ef5A	290	44.69		
1vd6A	224	46.31	c.1.18.3	119991
2iskA	230	47.49		
2pttB	112	48.36		
1ku3A	73	49.29	a.4.13.2	73000
2q6mA	212	51.52		
2dxaA	166	53.65		
1zzkA	82	59.66	d.51.1.1	125909
1tltA	319	61.01	c.2.1.3,d.81.1.5	107135,107136
1hnjA	317	61.20	c.95.1.2,c.95.1.2	35969,35970
1tiwA	602	61.47	a.176.1.1,c.1.23.2	112430,112431
2uyoA	310	61.97		
2cx1A	187	62.23	b.122.1.1,d.17.6.4	130967,130968
1wrjA	156	62.61		
1uw4A	91	63.94	d.58.7.4	100071
1ywqA	200	65.80	d.90.1.1	124162
2guzA	71	69.01		
2bzeA	153	69.53		
2freA	200	70.59	d.90.1.1	133985
2j58A	359	73.96		
2o1rA	81	74.86		
1zchA	255	75.62	d.90.1.1	124908
2b67A	204	75.82	d.90.1.1	127970
3c7jA	237	77.63		
3boqA	160	77.99		
1tu3F	79	78.94	h.1.27.2	112644
2cr5A	109	82.76	d.15.1.2	130733
1ykiA	217	85.00	d.90.1.1	123520
1dbxA	158	86.59	d.116.1.1	40928
1o1zA	234	87.21	c.1.18.3	86555
1oo0B	110	88.70	d.58.7.1	87183
1noxA	205	89.23	d.90.1.1	40242
2c8mA	262	89.73