# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	1.45e-13	d.98.1.1	67267
2g2uB	165	1.48e-13	d.98.1.1	134541
1dliA	402	7.342	a.100.1.4,c.2.1.6,c.26.3.1	18809,30213,31622
1u6eA	335	8.463	c.95.1.2,c.95.1.2	119568,119569
2a0mA	316	11.96	c.42.1.1	125960
2oxgB	124	15.15		
2fbhA	146	18.78	a.4.5.28	133245
1wdcB	156	25.23	a.39.1.5	17302
2gb4A	252	25.39		
2hmaA	376	25.89		
1gq6A	313	26.44	c.42.1.1	70341
2o8xA	70	27.76		
2h27A	73	29.09	a.4.13.2	135993
2f6rA	281	30.07		
1vd6A	224	30.10	c.1.18.3	119991
2bzeA	153	32.45		
1z82A	335	33.69		
2veoA	441	35.64		
2q6mA	212	36.23		
1t6sA	162	36.90	a.4.5.60,a.4.5.60	112271,112272
2grjA	192	37.77		
1tiwA	602	38.65	a.176.1.1,c.1.23.2	112430,112431
2qdrA	303	40.83		
1a8yA	367	43.10	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
1f5vA	240	44.76	d.90.1.1	40255
2pttB	112	50.18		
1j3wA	163	50.22	d.110.7.1	90833
2ef5A	290	50.61		
2ghpA	292	52.26	d.58.7.1,d.58.7.1,d.58.7.1	135184,135185,135186
1rw1A	114	54.29	c.47.1.12	111945
3boqA	160	54.50		
1qlwA	328	55.76	c.69.1.15	34722
2ijcA	145	55.79	a.152.1.3	137465
2hd5A	359	57.85		
1ywqA	200	58.67	d.90.1.1	124162
3c7jA	237	60.22		
2iskA	230	60.29		
1tu3F	79	61.82	h.1.27.2	112644
2pliA	91	62.25		
2uyoA	310	62.91		
1vhtA	218	63.47	c.37.1.1	100700
1ku3A	73	64.25	a.4.13.2	73000
2z99A	219	65.63		
2o4dA	165	66.11	a.152.1.3	138907
2bzgA	232	66.57	c.66.1.36	129559
1vjfA	180	67.17	d.116.1.1	100809
2ho3A	325	70.01		
2cfmA	561	73.16		
2dxaA	166	74.90		
2ja9A	175	75.52		
2b67A	204	76.42	d.90.1.1	127970
2z0dA	357	78.32		
1o1zA	234	80.93	c.1.18.3	86555
2pv7A	298	81.92		
1oo0B	110	81.99	d.58.7.1	87183
2czrA	226	84.83		
1luzA	88	85.55	b.40.4.5	74271
1y8aA	332	86.88		
2dnjA	260	87.17	d.151.1.1	41790
2p1mA	163	87.53		
1z6fA	363	89.83	b.105.1.1,e.3.1.1	124520,124521