# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	1.69e-12	d.98.1.1	67267
2g2uB	165	1.84e-12	d.98.1.1	134541
2oxgB	124	10.68		
2h27A	73	15.25	a.4.13.2	135993
2o8xA	70	23.19		
1dliA	402	23.68	a.100.1.4,c.2.1.6,c.26.3.1	18809,30213,31622
1wdcB	156	24.38	a.39.1.5	17302
1vd6A	224	24.54	c.1.18.3	119991
2fbhA	146	25.27	a.4.5.28	133245
1u6eA	335	25.98	c.95.1.2,c.95.1.2	119568,119569
1z82A	335	26.19		
1t6sA	162	26.44	a.4.5.60,a.4.5.60	112271,112272
2a0mA	316	27.76	c.42.1.1	125960
2grjA	192	28.05		
1gq6A	313	31.34	c.42.1.1	70341
2f6rA	281	31.87		
2gb4A	252	32.37		
2ho3A	325	33.06		
1a8yA	367	39.29	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
1vjfA	180	39.72	d.116.1.1	100809
1ku3A	73	43.20	a.4.13.2	73000
2iskA	230	47.29		
1a76	326	47.44		
1rxwA	336	49.16	a.60.7.1,c.120.1.2	98059,98060
1zzkA	82	50.49	d.51.1.1	125909
1luzA	88	51.51	b.40.4.5	74271
2r7dA	469	51.95		
1ywqA	200	54.20	d.90.1.1	124162
1rw1A	114	55.22	c.47.1.12	111945
1c1dA	355	55.55	c.2.1.7,c.58.1.1	30270,33918
1tu3F	79	57.41	h.1.27.2	112644
2bzgA	232	60.30	c.66.1.36	129559
2ef5A	290	61.95		
1o1zA	234	62.94	c.1.18.3	86555
1v4sA	455	65.52	c.55.1.3,c.55.1.3	100309,100310
2ijcA	145	65.69	a.152.1.3	137465
2dxaA	166	66.80		
2cx5A	158	67.52		
2o4dA	165	69.01	a.152.1.3	138907
3bemA	218	69.06		
1vhtA	218	70.78	c.37.1.1	100700
2a35A	215	71.20	c.2.1.2	126072
1j3wA	163	71.41	d.110.7.1	90833
1y8aA	332	72.70		
2r01A	210	73.23		
1noxA	205	73.43	d.90.1.1	40242
2ghpA	292	74.13	d.58.7.1,d.58.7.1,d.58.7.1	135184,135185,135186
1mpyA	307	80.41	d.32.1.3,d.32.1.3	38508,38509
2b67A	204	80.53	d.90.1.1	127970
3c7jA	237	80.71		
1wnaA	131	82.04	d.319.1.1	121091
2guzA	71	82.73		
1fn9A	365	83.78	d.196.1.1	59894
2q6mA	212	83.92		
1f5vA	240	84.45	d.90.1.1	40255
2bh1X	96	86.97		
1tiwA	602	88.87	a.176.1.1,c.1.23.2	112430,112431
1lc0A	294	89.47	c.2.1.3,d.81.1.4	73823,73824