# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	1.23e-12	d.98.1.1	67267
2g2uB	165	1.46e-12	d.98.1.1	134541
1dliA	402	10.41	a.100.1.4,c.2.1.6,c.26.3.1	18809,30213,31622
1u6eA	335	15.26	c.95.1.2,c.95.1.2	119568,119569
2oxgB	124	15.85		
2grjA	192	17.23		
2a0mA	316	17.25	c.42.1.1	125960
2o8xA	70	17.73		
2h27A	73	18.52	a.4.13.2	135993
2ghpA	292	20.93	d.58.7.1,d.58.7.1,d.58.7.1	135184,135185,135186
2fbhA	146	21.11	a.4.5.28	133245
1vd6A	224	21.55	c.1.18.3	119991
1z82A	335	23.18		
2f6rA	281	23.52		
1gq6A	313	29.69	c.42.1.1	70341
2gb4A	252	30.66		
1wdcB	156	32.27	a.39.1.5	17302
2ef5A	290	33.43		
1rw1A	114	36.41	c.47.1.12	111945
2bzeA	153	39.43		
2hmaA	376	40.54		
1t6sA	162	40.85	a.4.5.60,a.4.5.60	112271,112272
1vjfA	180	42.70	d.116.1.1	100809
1ku3A	73	43.54	a.4.13.2	73000
2ho3A	325	44.31		
2cx5A	158	51.87		
1j3wA	163	52.14	d.110.7.1	90833
1vhtA	218	55.57	c.37.1.1	100700
2qdrA	303	57.04		
2b67A	204	57.66	d.90.1.1	127970
2cx1A	187	57.88	b.122.1.1,d.17.6.4	130967,130968
2iskA	230	60.63		
1o1zA	234	64.09	c.1.18.3	86555
1fn9A	365	65.51	d.196.1.1	59894
2r7dA	469	65.82		
2pliA	91	67.50		
2ijcA	145	69.84	a.152.1.3	137465
1y8aA	332	71.45		
3bemA	218	71.54		
1rxwA	336	71.84	a.60.7.1,c.120.1.2	98059,98060
2bzgA	232	73.80	c.66.1.36	129559
2dxaA	166	73.88		
1a76	326	75.06		
1oo0B	110	76.45	d.58.7.1	87183
1a8yA	367	78.57	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
2o4dA	165	79.48	a.152.1.3	138907
1tu3F	79	79.59	h.1.27.2	112644
2hy5A	130	79.80	c.114.1.1	136865
2veoA	441	80.13		
1c1dA	355	81.32	c.2.1.7,c.58.1.1	30270,33918
2ja9A	175	83.70		
1f5vA	240	84.13	d.90.1.1	40255
1mpyA	307	84.14	d.32.1.3,d.32.1.3	38508,38509
1vs0A	310	85.25		
2cfmA	561	86.46		
2guzA	71	86.74		
3c7jA	237	87.19		
1kgdA	180	88.29	c.37.1.1	68582
2d1pA	140	89.29	c.114.1.1	131136
1wnaA	131	89.99	d.319.1.1	121091