# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	6.92e-13	d.98.1.1	134541
1jtgB	165	8.44e-13	d.98.1.1	67267
1qlwA	328	16.04	c.69.1.15	34722
2grjA	192	20.42		
2oxgB	124	22.68		
2pttB	112	27.30		
2cx5A	158	28.34		
2dxaA	166	32.07		
2ijcA	145	36.74	a.152.1.3	137465
1kqqA	139	37.40	a.4.3.1	72885
1oo0B	110	37.50	d.58.7.1	87183
1nu4A	97	37.93	d.58.7.1	80731
1uliA	460	38.84	b.33.1.2,d.129.3.3	107921,107922
2o8xA	70	39.85		
1yk3A	210	43.01	d.108.1.1	123493
1fp1D	372	47.32	a.4.5.29,c.66.1.12	59939,59940
2o4dA	165	47.75	a.152.1.3	138907
1lki	180	48.79		
1ztxE	108	51.75	b.1.18.4	125658
2z0xA	158	52.29		
2h27A	73	57.54	a.4.13.2	135993
2f6rA	281	58.35		
1a9nB	96	58.54	d.58.7.1	39165
2rilA	99	60.26		
2pbfA	227	62.97		
1gsoA	431	64.12	b.84.2.1,c.30.1.1,d.142.1.2	28240,31647,41492
1fn9A	365	65.90	d.196.1.1	59894
1nd4A	264	68.26	d.144.1.6	91815
2eo0A	147	69.34		
3cjxA	165	72.71		
1rw1A	114	74.23	c.47.1.12	111945
1wdvA	152	74.49	d.116.1.1	114539
1a2pA	110	83.47	d.1.1.2	36140
1ayoA	130	83.98	b.2.4.1	22431
2z99A	219	87.44		
1zzkA	82	88.52	d.51.1.1	125909
1m2dA	110	89.55	c.47.1.11	78476
1a0rB	340	89.90	b.69.4.1	27658