# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	5.13e-09	d.98.1.1	134541
1jtgB	165	9.12e-09	d.98.1.1	67267
1l3kA	196	0.2702	d.58.7.1,d.58.7.1	73539,73540
1fxlA	167	1.169	d.58.7.1,d.58.7.1	39183,39184
1zh5A	195	2.041	a.4.5.46,d.58.7.1	125073,125074
2qfjA	216	2.741		
2o38A	120	5.614		
2b5aA	77	14.31	a.35.1.3	127882
1repC	251	15.97	a.4.5.10,a.4.5.10	16125,16126
1wp5A	323	18.61	b.68.10.1	114780
3grsA	478	18.63	c.3.1.5,c.3.1.5,d.87.1.1	30441,30442,40152
2gfaA	119	20.42	b.34.9.1,b.34.9.1	135089,135090
1ta8A	332	21.36	d.142.2.2	112375
2croA	71	22.02	a.35.1.2	17038
1wdcB	156	23.53	a.39.1.5	17302
1wdvA	152	24.35	d.116.1.1	114539
2ej9A	237	24.76		
1r69A	69	26.25	a.35.1.2	17028
2a6cA	83	26.42	a.35.1.13	126236
2e5aA	347	26.65		
2cro	71	27.08		
2b67A	204	29.13	d.90.1.1	127970
1x2gA	337	29.21		
1r69	69	29.34		
1t6sA	162	29.75	a.4.5.60,a.4.5.60	112271,112272
1y7yA	74	31.71	a.35.1.3	122729
1yb3A	175	32.08	d.296.1.2	122869
1hyeA	313	32.78	c.2.1.5,d.162.1.1	61400,61401
2hxrA	238	33.24		
3c7jA	237	33.67		
3caxA	369	36.51		
1gx1A	160	37.79	d.79.5.1	70675
2yvyA	278	38.11		
2r9zA	463	38.80		
2qhsA	237	38.81		
3b7hA	78	38.82		
3bjuA	521	39.51		
1t5jA	313	39.88	a.209.1.1	99125
1a0rP	245	40.07	c.47.1.6	33054
2ewtA	71	40.50		
1n4aA	252	41.05	c.92.2.2	85317
2ghpA	292	41.79	d.58.7.1,d.58.7.1,d.58.7.1	135184,135185,135186
1ka1A	357	41.97	e.7.1.1	68369
1e43A	483	42.33	b.71.1.1,c.1.8.1	59217,59218
1suuA	312	45.10	b.68.10.1	99006
3bpuA	88	46.43		
3bemA	218	49.49		
2h36X	112	50.73		
1adrA	76	51.92	a.35.1.2	17042
1s6lA	212	52.76		
1b3tA	147	54.53	d.58.8.1	39228
2vapA	364	55.44		
2v0hA	456	55.83		
2pfiA	164	56.89		
1iv3A	152	57.72	d.79.5.1	76828
1t0aA	159	57.85	d.79.5.1	112192
2gruA	368	59.26		
2ef8A	84	60.81		
2z99A	219	60.86		
1r8sE	203	64.45	a.118.3.1	97248
3cloA	258	67.47		
1m12A	84	68.53	a.64.1.1	84745
1hkqA	132	69.27	a.4.5.10	83555
1ez4A	318	70.24	c.2.1.5,d.162.1.1	64917,64918
1v4pA	157	70.39	d.67.1.2	113533
1ggzA	148	73.40	a.39.1.5	70176
3bqpA	80	74.62		
2d4gA	171	74.67		
1utxA	66	77.15	a.35.1.3	108034
1otjA	283	77.42	b.82.2.5	93517
1hr6A	475	78.22	d.185.1.1,d.185.1.1	61164,61165
3broA	141	79.10		
2he4A	90	79.25		
1oz2A	331	80.05	b.34.9.3,b.34.9.3,b.34.9.3	93781,93782,93783
1fxjA	331	81.11	b.81.1.4,c.68.1.5	28062,34520
2o5gA	148	81.58		
2uzhA	165	82.12		
1kk8B	139	82.78	a.39.1.5	77430
2hivA	621	84.39		
2dbbA	151	87.08		
2cxiA	348	87.43