# List of top-scoring protein chains for T0399.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	2.15e-05	d.98.1.1	134541
1s0wC	165	2.59e-05	d.98.1.1	98311
1xxmC	165	3.23e-05		
2pxgA	118	0.3236		
1h6vA	499	7.449	c.3.1.5,c.3.1.5,d.87.1.1	60693,60694,60695
2j3nA	519	28.74		
2cfyA	521	28.93		
1knwA	425	42.39	b.49.2.3,c.1.6.1	90969,90970
2iorA	235	47.48		
2coiA	386	59.15		
2r19A	159	60.97		
2oqkA	117	63.22		
1y4uA	559	66.68		
1a0pA	290	66.75	a.60.9.1,d.163.1.1	18105,42165
2ioqA	624	70.39		
1zkqA	517	72.02		
2qdeA	397	85.68