# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	6.46e-11	d.98.1.1	67267
2g2uB	165	7.43e-11	d.98.1.1	134541
2h36X	112	8.835		
1vd6A	224	11.85	c.1.18.3	119991
2o8xA	70	12.40		
2h27A	73	16.01	a.4.13.2	135993
2iskA	230	18.00		
2gfaA	119	21.35	b.34.9.1,b.34.9.1	135089,135090
1kqqA	139	22.67	a.4.3.1	72885
2ifaA	208	23.68	d.90.1.1	137329
2cfmA	561	30.81		
1wdvA	152	33.03	d.116.1.1	114539
2oxgB	124	35.17		
2porA	301	37.08	f.4.3.1	43759
2r01A	210	38.06		
2h0vA	338	39.67		
1wrjA	156	40.91		
2q88A	257	41.50		
2pliA	91	41.79		
2fbhA	146	42.92	a.4.5.28	133245
2grjA	192	43.24		
2i5gA	325	45.41		
3bddA	142	46.80		
2agmA	167	47.81		
1j3wA	163	48.02	d.110.7.1	90833
1ituA	369	49.73	c.1.9.7	71423
1idrA	136	49.75	a.1.1.1	62301
2je8A	848	50.02		
2a0mA	316	50.03	c.42.1.1	125960
2bzeA	153	53.38		
2z0xA	158	55.54		
1zud2	66	56.25		
2freA	200	58.65	d.90.1.1	133985
1dlwA	116	58.97	a.1.1.1	14982
2guzA	71	60.52		
2aytA	237	60.55		
3bemA	218	60.72		
2zceA	291	62.54		
1ywqA	200	63.59	d.90.1.1	124162
1ykiA	217	64.86	d.90.1.1	123520
2cx5A	158	65.12		
1vs0A	310	70.28		
1noxA	205	70.54	d.90.1.1	40242
2o1rA	81	70.80		
2gauA	232	72.16	a.4.5.4,b.82.3.2	134894,134895
2b67A	204	73.08	d.90.1.1	127970
1ku3A	73	75.78	a.4.13.2	73000
1vkiA	181	76.73	d.116.1.1	108664
1f5vA	240	76.76	d.90.1.1	40255
1utxA	66	77.43	a.35.1.3	108034
2hmaA	376	78.14		
2ckkA	127	78.38		
1ztuA	341	78.76		
1tvfA	369	79.82	b.105.1.2,e.3.1.1	107358,107359
1adrA	76	81.23	a.35.1.2	17042
2croA	71	82.04	a.35.1.2	17038
2gxgA	146	83.43		
2oaiA	94	84.72		
1qloA	34	85.04	j.35.1.1	46281
2z99A	219	85.85		
2qndA	144	86.73		
3broA	141	87.49		
1dytA	133	88.49	d.5.1.1	37288
2pttB	112	90.00