# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	3.13e-11	d.98.1.1	67267
2g2uB	165	3.17e-11	d.98.1.1	134541
2h36X	112	5.044		
1vd6A	224	11.60	c.1.18.3	119991
2gfaA	119	21.70	b.34.9.1,b.34.9.1	135089,135090
2o8xA	70	22.60		
2h0vA	338	28.39		
2iskA	230	29.05		
2porA	301	29.80	f.4.3.1	43759
2h27A	73	29.98	a.4.13.2	135993
2cfmA	561	31.79		
2r01A	210	32.50		
2ifaA	208	33.16	d.90.1.1	137329
2je8A	848	40.88		
2oxgB	124	42.12		
2a0mA	316	45.64	c.42.1.1	125960
1vs0A	310	47.08		
2z99A	219	47.67		
3bddA	142	48.67		
2pliA	91	50.57		
2bzeA	153	50.67		
1wnaA	131	53.11	d.319.1.1	121091
1esiA	262	53.29	e.3.1.1	42682
2pttB	112	58.05		
1vmiA	355	59.81	c.77.1.5	113678
3ccgA	190	60.87		
2i5gA	325	62.48		
1ituA	369	65.11	c.1.9.7	71423
2p2sA	336	65.25		
1wdvA	152	65.96	d.116.1.1	114539
2fbhA	146	72.86	a.4.5.28	133245
1zud2	66	73.60		
2aytA	237	77.08		
1noxA	205	77.34	d.90.1.1	40242
3bemA	218	77.69		
2z0xA	158	80.37		
2grjA	192	80.37		
1ztuA	341	81.19		
2q88A	257	84.40		
2bv1A	145	85.08		
1wrjA	156	85.46		
1ywqA	200	88.52	d.90.1.1	124162
1t3iA	420	89.20	c.67.1.3	106354