# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2g2uB 165 1.00e-12 d.98.1.1 134541 1jtgB 165 1.32e-12 d.98.1.1 67267 1wdvA 152 3.819 d.116.1.1 114539 2cx5A 158 5.307 1vd6A 224 6.988 c.1.18.3 119991 2h27A 73 9.453 a.4.13.2 135993 2z0xA 158 9.457 2o8xA 70 10.31 2r01A 210 10.55 2h36X 112 10.90 2ef8A 84 13.56 2bzeA 153 16.16 1zud2 66 16.85 1t3iA 420 17.80 c.67.1.3 106354 2q88A 257 18.83 1z3eA 132 21.47 c.47.1.12 124400 1r69A 69 23.12 a.35.1.2 17028 1wrjA 156 24.35 2cfmA 561 25.06 1nofA 383 25.17 b.71.1.2,c.1.8.3 92020,92021 2h0vA 338 25.18 1ogpA 393 25.20 b.1.18.6,d.176.1.1 92927,92928 1t95A 240 26.39 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1utxA 66 26.85 a.35.1.3 108034 2iskA 230 27.46 1dlwA 116 28.95 a.1.1.1 14982 1zl0A 311 31.26 c.8.10.1,c.23.16.7 125231,125232 2b67A 204 32.16 d.90.1.1 127970 2oxgB 124 32.27 1adrA 76 32.29 a.35.1.2 17042 1qw2A 102 34.30 d.249.1.1 96456 2freA 200 37.86 d.90.1.1 133985 3bemA 218 38.37 2croA 71 40.11 a.35.1.2 17038 2aunA 317 41.82 c.8.10.1,c.23.16.7 127334,127335 1noxA 205 42.01 d.90.1.1 40242 2fbhA 146 43.59 a.4.5.28 133245 2i5gA 325 43.70 1cjxA 357 44.01 d.32.1.3,d.32.1.3 38516,38517 1mgtA 174 44.33 a.4.2.1,c.55.7.1 16078,33753 1nox 205 44.87 2je8A 848 45.74 2agmA 167 45.95 2aumA 317 46.01 c.8.10.1,c.23.16.7 127330,127331 2ex2A 458 48.05 e.3.1.3 132497 2fp8A 322 48.61 1vs0A 310 48.80 1zrsA 317 50.69 c.8.10.1,c.23.16.7 125556,125557 2cro 71 51.48 2ifaA 208 51.58 d.90.1.1 137329 1p9qC 256 51.65 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 2ckkA 127 53.00 1luzA 88 54.33 b.40.4.5 74271 1vq0A 302 54.51 d.193.1.1,g.81.1.1 114000,114001 1ui7A 638 55.69 b.30.2.1,d.17.2.1,d.17.2.1 99413,99414,99415 1orc 71 56.73 1hleA 345 57.33 e.1.1.1 42618 1vjfA 180 58.28 d.116.1.1 100809 1ku3A 73 61.17 a.4.13.2 73000 1lkoA 191 61.25 a.25.1.1,g.41.5.1 78063,78064 1ryt 190 61.89 2z2mC 125 62.57 2dxaA 166 63.31 2pbtA 134 64.06 2bbrA 195 65.64 1ryaA 160 66.13 d.113.1.5 105122 2b5aA 77 66.38 a.35.1.3 127882 2astA 159 67.13 3broA 141 67.70 1jj2Q 154 70.14 d.55.1.1 63102 1idrA 136 70.42 a.1.1.1 62301 2bwvA 440 72.88 c.55.2.1,d.127.1.1 129387,129388 2guzA 71 73.84 1orrA 347 77.39 c.2.1.2 93460 1rxwA 336 78.13 a.60.7.1,c.120.1.2 98059,98060 1repC 251 81.22 a.4.5.10,a.4.5.10 16125,16126 1ykiA 217 84.32 d.90.1.1 123520 1qntA 176 85.54 a.4.2.1,c.55.7.1 16074,33749 2z99A 219 85.55 2eceA 462 85.92 1ituA 369 85.93 c.1.9.7 71423 2f96A 224 86.09 c.55.3.5 133153 1pjxA 314 86.50 b.68.6.1 104167 2yzhA 171 86.70 1y7yA 74 87.64 a.35.1.3 122729 2o9cA 342 87.70 1ta8A 332 88.34 d.142.2.2 112375 3bddA 142 89.14