# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	2.69e-10	d.98.1.1	134541
1jtgB	165	5.16e-10	d.98.1.1	67267
2h36X	112	10.61		
2a0mA	316	12.13	c.42.1.1	125960
1vd6A	224	12.94	c.1.18.3	119991
1kqqA	139	15.68	a.4.3.1	72885
2o8xA	70	16.00		
2h27A	73	19.05	a.4.13.2	135993
1wdvA	152	19.33	d.116.1.1	114539
2cfmA	561	21.95		
2agmA	167	24.21		
2porA	301	25.05	f.4.3.1	43759
1hleA	345	27.48	e.1.1.1	42618
1t3iA	420	34.21	c.67.1.3	106354
1zud2	66	35.71		
2gfaA	119	36.43	b.34.9.1,b.34.9.1	135089,135090
2z0xA	158	37.56		
2ifaA	208	41.04	d.90.1.1	137329
2oxgB	124	44.87		
1ajoA	214	46.23	b.29.1.2	24179
1cx4A	305	46.69	b.82.3.2,b.82.3.2	59099,59100
2grjA	192	47.11		
2cx5A	158	47.88		
1tvfA	369	48.10	b.105.1.2,e.3.1.1	107358,107359
2r01A	210	50.30		
2iskA	230	52.41		
1vs0A	310	55.98		
2bv1A	145	56.36		
2pliA	91	59.56		
2hmaA	376	60.28		
2freA	200	63.64	d.90.1.1	133985
1j3wA	163	63.74	d.110.7.1	90833
2pttB	112	69.23		
1ogpA	393	69.60	b.1.18.6,d.176.1.1	92927,92928
1ryt	190	70.21		
2h0vA	338	70.69		
1pjxA	314	71.22	b.68.6.1	104167
1b71A	191	72.61	a.25.1.1,g.41.5.1	16647,45246
1lkoA	191	74.05	a.25.1.1,g.41.5.1	78063,78064
1gq6A	313	74.50	c.42.1.1	70341
2bzeA	153	74.50		
2fpnA	216	74.82	d.129.10.1	133908
1ykiA	217	74.95	d.90.1.1	123520
1o7nA	449	77.73	b.33.1.2,d.129.3.3	81162,81163
1ywqA	200	78.49	d.90.1.1	124162
1wrjA	156	80.52		
1l1zA	274	81.95	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
1z3eA	132	85.68	c.47.1.12	124400