# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	1.41e-10	d.98.1.1	134541
1jtgB	165	1.88e-10	d.98.1.1	67267
2a0mA	316	9.000	c.42.1.1	125960
2o8xA	70	12.16		
2h36X	112	13.94		
2h27A	73	15.27	a.4.13.2	135993
1kqqA	139	18.85	a.4.3.1	72885
1vd6A	224	19.18	c.1.18.3	119991
2cfmA	561	21.33		
2z0xA	158	33.12		
2porA	301	33.88	f.4.3.1	43759
2grjA	192	34.62		
1hleA	345	34.82	e.1.1.1	42618
2ifaA	208	35.42	d.90.1.1	137329
1wdvA	152	35.71	d.116.1.1	114539
2agmA	167	36.36		
1ajoA	214	37.31	b.29.1.2	24179
1zud2	66	38.36		
1gq6A	313	41.80	c.42.1.1	70341
2cx5A	158	42.21		
1t3iA	420	43.59	c.67.1.3	106354
2h0vA	338	45.82		
2oxgB	124	50.26		
1zd8A	227	50.82		
3bddA	142	51.21		
2iskA	230	51.70		
2r01A	210	52.82		
2freA	200	53.96	d.90.1.1	133985
1ykiA	217	56.80	d.90.1.1	123520
2pttB	112	58.96		
2bv1A	145	59.32		
2pliA	91	61.01		
2dkhA	639	61.47		
1ituA	369	63.04	c.1.9.7	71423
1j3wA	163	63.33	d.110.7.1	90833
3bemA	218	65.95		
2i5gA	325	66.38		
1ztuA	341	68.00		
1t6sA	162	71.37	a.4.5.60,a.4.5.60	112271,112272
2q88A	257	71.67		
2bzeA	153	72.28		
1noxA	205	72.34	d.90.1.1	40242
2aytA	237	73.56		
2z69A	154	75.10		
2qndA	144	75.57		
1ywqA	200	75.65	d.90.1.1	124162
2zceA	291	75.87		
2fbhA	146	80.89	a.4.5.28	133245
3bjaA	139	82.40		
1tvfA	369	84.24	b.105.1.2,e.3.1.1	107358,107359
1vmiA	355	84.33	c.77.1.5	113678