# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	1.93e-10	d.98.1.1	134541
1jtgB	165	2.44e-10	d.98.1.1	67267
2a0mA	316	8.705	c.42.1.1	125960
2h36X	112	13.70		
2agmA	167	14.47		
2o8xA	70	15.26		
1kqqA	139	18.61	a.4.3.1	72885
1vd6A	224	18.81	c.1.18.3	119991
2porA	301	20.48	f.4.3.1	43759
2h27A	73	20.61	a.4.13.2	135993
2cfmA	561	28.93		
2grjA	192	32.07		
2iskA	230	36.87		
1hleA	345	38.12	e.1.1.1	42618
2pttB	112	38.39		
1ajoA	214	38.67	b.29.1.2	24179
2ifaA	208	39.55	d.90.1.1	137329
1wdvA	152	40.04	d.116.1.1	114539
2bv1A	145	40.54		
1gq6A	313	45.19	c.42.1.1	70341
1t3iA	420	46.24	c.67.1.3	106354
1zud2	66	46.80		
2r01A	210	47.12		
2z0xA	158	49.63		
2oxgB	124	52.85		
2ckkA	127	53.19		
2pliA	91	56.00		
2h0vA	338	61.09		
1cx4A	305	61.27	b.82.3.2,b.82.3.2	59099,59100
2bzeA	153	63.84		
2z69A	154	64.27		
2cx5A	158	65.54		
2aytA	237	66.79		
2freA	200	67.93	d.90.1.1	133985
2qndA	144	68.11		
1ryt	190	69.35		
1o7nA	449	70.32	b.33.1.2,d.129.3.3	81162,81163
3bddA	142	70.37		
1lkoA	191	75.11	a.25.1.1,g.41.5.1	78063,78064
1b71A	191	75.13	a.25.1.1,g.41.5.1	16647,45246
2oqyA	391	76.80		
1j3wA	163	78.30	d.110.7.1	90833
1tvfA	369	78.36	b.105.1.2,e.3.1.1	107358,107359
1ztuA	341	79.34		
2dkhA	639	80.01		
1noxA	205	81.03	d.90.1.1	40242
1ykiA	217	81.31	d.90.1.1	123520
2o9cA	342	82.61		
3bemA	218	83.71		
2zceA	291	84.71		
1ywqA	200	86.00	d.90.1.1	124162
2i5gA	325	86.28		
2hmaA	376	87.46		
1ogpA	393	88.42	b.1.18.6,d.176.1.1	92927,92928
2fpnA	216	89.58	d.129.10.1	133908