# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	1.58e-10	d.98.1.1	134541
1jtgB	165	2.33e-10	d.98.1.1	67267
2h36X	112	4.062		
2h27A	73	11.30	a.4.13.2	135993
2o8xA	70	11.37		
3broA	141	12.65		
3bddA	142	13.25		
3bjaA	139	19.32		
2gxgA	146	22.13		
2bbrA	195	28.05		
2yzhA	171	29.44		
2fbhA	146	30.94	a.4.5.28	133245
1m07A	111	33.35	d.5.1.1	78328
2b5aA	77	36.89	a.35.1.3	127882
3bj6A	152	39.34		
2bv6A	142	41.38		
2grjA	192	41.81		
2z0xA	158	43.65		
2eo0A	147	47.42		
2croA	71	47.70	a.35.1.2	17038
2cro	71	48.52		
2z99A	219	49.25		
1utxA	66	49.80	a.35.1.3	108034
1wdvA	152	53.13	d.116.1.1	114539
1u8bA	133	55.12		
1y7yA	74	55.18	a.35.1.3	122729
2cx5A	158	60.00		
1t95A	240	63.84	a.5.8.1,d.235.1.2,d.58.11.3	106705,106706,106707
2ef8A	84	66.32		
1adrA	76	68.04	a.35.1.2	17042
2oxgB	124	70.45		
2bv1A	145	70.68		
3boqA	160	71.31		
2fa5A	162	71.38		
1eb7A	323	73.82	a.3.1.5,a.3.1.5	59404,59405
1ku3A	73	75.36	a.4.13.2	73000
2o38A	120	75.37		
2z0tA	109	76.75		
1yk3A	210	78.68	d.108.1.1	123493
2qwwA	154	79.12		
2opwA	291	79.13		
1poiB	260	79.75	c.124.1.3	34155
2rdpA	150	82.09		
1kqqA	139	82.24	a.4.3.1	72885
1r69A	69	82.28	a.35.1.2	17028
1repC	251	87.41	a.4.5.10,a.4.5.10	16125,16126
2frhA	127	89.23	a.4.5.28	133988
1vz0A	230	89.64	a.4.14.1,d.268.1.1	108929,108930