# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	4.28e-11	d.98.1.1	67267
2g2uB	165	5.83e-11	d.98.1.1	134541
2h36X	112	11.10		
2o8xA	70	12.46		
2pliA	91	14.60		
2h27A	73	16.13	a.4.13.2	135993
1wdvA	152	16.88	d.116.1.1	114539
2fbhA	146	18.18	a.4.5.28	133245
2r01A	210	21.48		
2agmA	167	21.99		
2h0vA	338	22.47		
2a0mA	316	23.42	c.42.1.1	125960
2cx5A	158	24.92		
1vd6A	224	25.72	c.1.18.3	119991
1kqqA	139	27.12	a.4.3.1	72885
2cfmA	561	27.65		
1wrjA	156	29.73		
2oxgB	124	31.38		
2z0xA	158	33.55		
1m6yA	301	34.14	a.60.13.1,c.66.1.23	78716,78717
1ituA	369	46.51	c.1.9.7	71423
1ykiA	217	46.92	d.90.1.1	123520
2q88A	257	47.34		
2o1rA	81	48.46		
3bddA	142	49.42		
2i5gA	325	49.72		
2ifaA	208	52.15	d.90.1.1	137329
2dkhA	639	52.77		
3bemA	218	53.06		
1hleA	345	53.36	e.1.1.1	42618
2gxgA	146	56.52		
1zl0A	311	58.71	c.8.10.1,c.23.16.7	125231,125232
1ryt	190	59.03		
2iskA	230	59.23		
3broA	141	59.92		
2oaiA	94	60.12		
1zud2	66	61.51		
1vjfA	180	61.74	d.116.1.1	100809
1tvfA	369	63.62	b.105.1.2,e.3.1.1	107358,107359
2freA	200	63.69	d.90.1.1	133985
1lkoA	191	65.30	a.25.1.1,g.41.5.1	78063,78064
2gfaA	119	66.55	b.34.9.1,b.34.9.1	135089,135090
2porA	301	67.95	f.4.3.1	43759
2p13A	90	71.49		
2hmaA	376	72.93		
1t95A	240	72.96	a.5.8.1,d.235.1.2,d.58.11.3	106705,106706,106707
2aumA	317	73.32	c.8.10.1,c.23.16.7	127330,127331
2p2sA	336	74.90		
1noxA	205	75.22	d.90.1.1	40242
2aunA	317	75.55	c.8.10.1,c.23.16.7	127334,127335
1j3wA	163	76.25	d.110.7.1	90833
1t3iA	420	76.99	c.67.1.3	106354
2r2zA	93	77.20		
3bs6A	280	78.38		
2oqyA	391	79.36		
2grjA	192	79.86		
1pjxA	314	82.33	b.68.6.1	104167
1nofA	383	82.40	b.71.1.2,c.1.8.3	92020,92021
1idrA	136	82.41	a.1.1.1	62301
1zchA	255	82.46	d.90.1.1	124908
1utxA	66	83.54	a.35.1.3	108034
2bv1A	145	83.62		
2o5fA	171	85.83		
2bzeA	153	88.23		
1dlwA	116	88.23	a.1.1.1	14982