# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2g2uB 165 7.16e-11 d.98.1.1 134541 1jtgB 165 8.54e-11 d.98.1.1 67267 2dkhA 639 1.851 2agmA 167 2.055 2hpkA 208 2.460 1mtyD 512 3.599 a.25.1.2 16742 2pnqA 467 3.726 2p2sA 336 5.217 2fp4B 395 5.833 c.23.4.1,d.142.1.4 133897,133898 1aosA 464 6.185 a.127.1.1 19414 1nofA 383 7.190 b.71.1.2,c.1.8.3 92020,92021 1xwfA 431 7.685 c.2.1.4,c.23.12.3 122392,122393 2p8bA 369 7.913 2bv6A 142 8.089 2q4aA 330 10.44 b.82.2.8 139839 2r01A 210 14.43 1gvjA 146 14.97 a.4.5.21 90525 2fbhA 146 15.15 a.4.5.28 133245 2hhjA 267 17.69 c.60.1.1 136497 2q88A 257 18.03 2r7dA 469 18.44 1vd6A 224 19.68 c.1.18.3 119991 2h36X 112 20.05 2pgeA 377 21.14 2cfmA 561 21.84 2oxgB 124 21.97 2z1mA 345 22.00 1h6vA 499 22.02 c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 2z0xA 158 23.09 3prn 289 23.24 1gydB 315 23.77 b.67.2.1 70751 2e58A 308 24.73 1qy5A 269 27.10 d.122.1.1 96573 1ooyA 481 27.77 c.124.1.3,c.124.1.2 93388,93389 1f1xA 322 28.38 d.32.1.3,d.32.1.3 83208,83209 1efpB 252 28.62 c.26.2.3 31636 2v74B 346 29.63 2porA 301 29.75 f.4.3.1 43759 2pliA 91 30.56 1l5aA 436 31.18 c.43.1.2,c.43.1.2 75923,75924 2o8xA 70 33.95 1g72A 573 34.46 b.70.1.1 27680 9gafA 295 35.03 d.153.1.5 42008 1fc6A 388 35.36 b.36.1.3,c.14.1.2 64738,64739 2ad6A 571 35.46 b.70.1.1 126568 1eg5A 384 36.08 c.67.1.3 34429 1bu6O 501 36.35 c.55.1.4,c.55.1.4 33499,33500 3b40A 417 37.54 1kqqA 139 37.80 a.4.3.1 72885 1wdvA 152 37.90 d.116.1.1 114539 2hi2A 158 38.42 1ppjA 446 40.88 d.185.1.1,d.185.1.1 104252,104253 2cx5A 158 41.12 2o9cA 342 41.85 2h27A 73 41.98 a.4.13.2 135993 1wkbA 810 42.31 1su8A 636 42.55 e.26.1.2 98999 2h0uA 217 43.15 2pfxA 191 43.18 3coxA 507 43.21 c.3.1.2,d.16.1.1 30332,37863 1kmkA 406 44.25 c.67.1.3 68696 1ogpA 393 44.86 b.1.18.6,d.176.1.1 92927,92928 1qhfA 240 44.96 c.60.1.1 33960 3cblA 377 45.78 1vjfA 180 49.76 d.116.1.1 100809 1o7nA 449 51.35 b.33.1.2,d.129.3.3 81162,81163 2e18A 257 51.88 3cox 507 52.63 3bs6A 280 52.80 3bs1A 103 52.85 2eutA 294 53.18 a.93.1.1 132407 1nj4A 363 53.68 b.105.1.1,e.3.1.1 80545,80546 2h1yA 321 53.69 2g0wA 296 54.33 c.1.15.4 134503 1ig8A 486 55.57 c.55.1.3,c.55.1.3 64746,64747 2i3oA 516 56.20 d.153.1.6 137027 1ztuA 341 56.46 2rhsB 800 57.32 2vhxA 377 57.86 1gpiA 431 58.07 b.29.1.10 65450 2gfaA 119 58.36 b.34.9.1,b.34.9.1 135089,135090 2b67A 204 59.82 d.90.1.1 127970 1ed8A 449 59.90 c.76.1.1 34988 2je8A 848 63.52 1o12A 376 63.82 b.92.1.5,c.1.9.10 80758,80759 2rijA 387 63.91 1qxyA 252 64.11 d.127.1.1 96565 1bn8A 420 64.61 b.80.1.1 28022 1apyB 141 64.96 2z99A 219 65.19 1iugA 352 66.15 c.67.1.3 90699 1vb3A 428 67.27 c.79.1.1 119942 2z2nA 299 67.38 1bgpA 309 68.83 a.93.1.1 18690 2iskA 230 68.85 2obhA 143 70.30 1tltA 319 71.17 c.2.1.3,d.81.1.5 107135,107136 2rh1A 500 71.50 1kapP 479 74.05 b.80.7.1,d.92.1.6 28012,40298 2aaoA 166 75.12 1hr6B 443 76.37 d.185.1.1,d.185.1.1 61166,61167 2zceA 291 76.41 1d0vA 356 76.77 c.39.1.1 32476 3boqA 160 77.47 1cnvA 299 78.16 c.1.8.5 28989 1v9wA 130 80.42 c.47.1.16 108453 2ckkA 127 81.06 2oolA 337 83.50 1uby 367 84.16 2atfA 200 84.95 b.82.1.19 127290 2awpA 198 85.55 1s9aA 257 86.22 b.3.6.1 105379 2b5hA 200 87.11 b.82.1.19 127894 3b79A 129 87.74 1wrjA 156 87.84 1my6A 199 88.44 a.2.11.1,d.44.1.1 85232,85233 1m6yA 301 88.80 a.60.13.1,c.66.1.23 78716,78717 2cvzA 289 89.33 a.100.1.1,c.2.1.6 130890,130891