# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	7.77e-11	d.98.1.1	67267
2g2uB	165	8.90e-11	d.98.1.1	134541
2o8xA	70	12.51		
2h36X	112	15.37		
2h27A	73	17.02	a.4.13.2	135993
2pliA	91	18.91		
2fbhA	146	20.45	a.4.5.28	133245
2a0mA	316	21.26	c.42.1.1	125960
2cx5A	158	21.68		
1wdvA	152	23.05	d.116.1.1	114539
2z0xA	158	23.91		
2h0vA	338	25.97		
2r01A	210	26.09		
2oxgB	124	33.46		
3bddA	142	34.60		
2agmA	167	36.04		
2cfmA	561	37.07		
1vd6A	224	40.52	c.1.18.3	119991
2i5gA	325	41.42		
1ituA	369	41.44	c.1.9.7	71423
2q88A	257	42.03		
2grjA	192	44.27		
1kqqA	139	46.98	a.4.3.1	72885
1ykiA	217	50.10	d.90.1.1	123520
3bemA	218	52.64		
1vjfA	180	52.90	d.116.1.1	100809
2gxgA	146	52.94		
2bv1A	145	54.61		
2p2sA	336	54.64		
2iskA	230	55.30		
2ifaA	208	55.89	d.90.1.1	137329
1ztuA	341	57.67		
2bzeA	153	58.67		
2oqyA	391	59.99		
3broA	141	62.32		
1zud2	66	63.60		
2porA	301	65.07	f.4.3.1	43759
1zd8A	227	65.20		
2gfaA	119	68.39	b.34.9.1,b.34.9.1	135089,135090
2r2zA	93	71.01		
2dkhA	639	74.35		
2o1rA	81	75.28		
1dlwA	116	75.58	a.1.1.1	14982
2ckkA	127	75.64		
1idrA	136	76.27	a.1.1.1	62301
1wnaA	131	76.37	d.319.1.1	121091
3bjaA	139	77.11		
1t6sA	162	77.57	a.4.5.60,a.4.5.60	112271,112272
1z3eA	132	77.62	c.47.1.12	124400
1ku3A	73	79.17	a.4.13.2	73000
2z99A	219	81.43		
1m6yA	301	81.60	a.60.13.1,c.66.1.23	78716,78717
1ajoA	214	81.74	b.29.1.2	24179
1wrjA	156	82.11		
1zchA	255	82.54	d.90.1.1	124908
2freA	200	84.39	d.90.1.1	133985
1noxA	205	85.30	d.90.1.1	40242
2qndA	144	86.26		
3bj6A	152	88.42		
1nofA	383	88.64	b.71.1.2,c.1.8.3	92020,92021