# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	3.71e-11	d.98.1.1	67267
2g2uB	165	3.82e-11	d.98.1.1	134541
2a0mA	316	7.902	c.42.1.1	125960
3bddA	142	16.73		
2h36X	112	22.90		
2agmA	167	26.97		
2o8xA	70	27.61		
2gxgA	146	27.72		
2fbhA	146	29.57	a.4.5.28	133245
3broA	141	30.27		
3bjaA	139	30.31		
2h27A	73	32.35	a.4.13.2	135993
2oqyA	391	33.58		
2r01A	210	35.09		
1ajoA	214	36.80	b.29.1.2	24179
2aytA	237	37.79		
2oxgB	124	37.83		
1t3iA	420	39.76	c.67.1.3	106354
2bzeA	153	40.15		
2porA	301	43.17	f.4.3.1	43759
1vd6A	224	44.19	c.1.18.3	119991
2ifaA	208	46.63	d.90.1.1	137329
2pttB	112	49.46		
2z99A	219	52.45		
1kqqA	139	52.86	a.4.3.1	72885
2pliA	91	54.68		
1xfkA	336	56.91	c.42.1.1	115264
3bj6A	152	62.24		
2iskA	230	62.48		
1z3eA	132	66.64	c.47.1.12	124400
2bv6A	142	67.04		
1esiA	262	70.56	e.3.1.1	42682
2grjA	192	70.57		
1cx4A	305	70.76	b.82.3.2,b.82.3.2	59099,59100
1vmiA	355	74.16	c.77.1.5	113678
1gq6A	313	74.50	c.42.1.1	70341
1zd8A	227	76.77		
2z0xA	158	77.81		
1wdvA	152	80.33	d.116.1.1	114539
2cfmA	561	80.73		
1lkoA	191	83.93	a.25.1.1,g.41.5.1	78063,78064
2h0vA	338	85.62		
1ryt	190	86.40		
2nnnA	140	87.15		
2q6mA	212	87.49		
2hmaA	376	89.45		
2fpnA	216	89.45	d.129.10.1	133908