# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	1.57e-11	d.98.1.1	67267
2g2uB	165	1.69e-11	d.98.1.1	134541
2h27A	73	14.26	a.4.13.2	135993
2h36X	112	15.35		
1vd6A	224	15.99	c.1.18.3	119991
2o8xA	70	16.84		
2oxgB	124	17.53		
1t3iA	420	21.10	c.67.1.3	106354
2a0mA	316	23.63	c.42.1.1	125960
1wdvA	152	27.24	d.116.1.1	114539
2gfaA	119	29.17	b.34.9.1,b.34.9.1	135089,135090
2z0xA	158	31.86		
2r01A	210	34.34		
3bddA	142	36.32		
2oqyA	391	36.75		
2fbhA	146	38.04	a.4.5.28	133245
2grjA	192	40.20		
3broA	141	40.67		
2cx5A	158	45.86		
1lkoA	191	46.51	a.25.1.1,g.41.5.1	78063,78064
1b71A	191	47.41	a.25.1.1,g.41.5.1	16647,45246
1ryt	190	50.53		
1ituA	369	51.53	c.1.9.7	71423
2ifaA	208	55.27	d.90.1.1	137329
1z3eA	132	56.01	c.47.1.12	124400
1qloA	34	57.59	j.35.1.1	46281
2ef8A	84	59.17		
1dlwA	116	60.81	a.1.1.1	14982
2bzeA	153	61.79		
2bx2L	517	64.53		
2astA	159	65.45		
1wrjA	156	66.71		
1m6yA	301	66.97	a.60.13.1,c.66.1.23	78716,78717
2gxgA	146	67.09		
1ztuA	341	67.70		
2h0vA	338	68.77		
2z99A	219	68.81		
3ccgA	190	69.99		
2o9cA	342	70.58		
2i5gA	325	74.19		
2iskA	230	74.61		
1zud2	66	75.03		
2cfmA	561	76.78		
1gq6A	313	78.18	c.42.1.1	70341
2aytA	237	79.59		
1qntA	176	81.21	a.4.2.1,c.55.7.1	16074,33749
1wnaA	131	83.99	d.319.1.1	121091
1mgtA	174	84.45	a.4.2.1,c.55.7.1	16078,33753
1vjfA	180	85.63	d.116.1.1	100809
1l1zA	274	86.59	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
2bv1A	145	86.68		
1kqqA	139	86.88	a.4.3.1	72885
1ykiA	217	87.51	d.90.1.1	123520
1utxA	66	87.58	a.35.1.3	108034
1ogpA	393	89.50	b.1.18.6,d.176.1.1	92927,92928