# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	6.08e-11	d.98.1.1	67267
2g2uB	165	6.52e-11	d.98.1.1	134541
2h36X	112	13.13		
1vd6A	224	13.96	c.1.18.3	119991
2o8xA	70	14.93		
2h27A	73	18.86	a.4.13.2	135993
2a0mA	316	21.58	c.42.1.1	125960
1t3iA	420	24.81	c.67.1.3	106354
1wdvA	152	27.49	d.116.1.1	114539
2oxgB	124	27.64		
2bzeA	153	32.78		
2cfmA	561	38.14		
2agmA	167	38.18		
3bddA	142	41.41		
2r01A	210	44.78		
2z0xA	158	47.84		
2pliA	91	50.14		
2h0vA	338	51.25		
2grjA	192	51.83		
1z3eA	132	54.74	c.47.1.12	124400
1hleA	345	56.01	e.1.1.1	42618
1o7nA	449	57.62	b.33.1.2,d.129.3.3	81162,81163
2iskA	230	59.05		
1zud2	66	59.42		
1kqqA	139	59.53	a.4.3.1	72885
1cx4A	305	62.17	b.82.3.2,b.82.3.2	59099,59100
2fbhA	146	63.55	a.4.5.28	133245
2ifaA	208	63.70	d.90.1.1	137329
2cx5A	158	63.71		
1ituA	369	67.55	c.1.9.7	71423
2oqyA	391	70.49		
2i5gA	325	73.02		
2porA	301	74.80	f.4.3.1	43759
1qloA	34	75.62	j.35.1.1	46281
1wrjA	156	76.88		
1ykiA	217	77.06	d.90.1.1	123520
2q88A	257	77.88		
2je8A	848	77.88		
1ztuA	341	78.25		
2hmaA	376	79.14		
2gxgA	146	81.46		
2gauA	232	82.43	a.4.5.4,b.82.3.2	134894,134895
1vmiA	355	85.67	c.77.1.5	113678
2z2mC	125	88.18		
2z99A	219	88.82