# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	9.63e-11	d.98.1.1	134541
1jtgB	165	1.23e-10	d.98.1.1	67267
2agmA	167	8.561		
2id3A	225	27.59	a.4.1.9,a.121.1.1	137261,137262
2grjA	192	29.74		
2oxgB	124	31.13		
2pttB	112	31.16		
2z99A	219	37.28		
2opwA	291	41.35		
2h27A	73	43.76	a.4.13.2	135993
3bddA	142	48.02		
1hleA	345	50.81	e.1.1.1	42618
2hytA	197	54.02		
2o8xA	70	55.15		
1repC	251	55.83	a.4.5.10,a.4.5.10	16125,16126
1wnaA	131	57.22	d.319.1.1	121091
2fa5A	162	61.40		
2bv1A	145	62.00		
2ozlA	365	62.33		
1ajoA	214	63.52	b.29.1.2	24179
2guhA	214	64.63		
2eo0A	147	65.40		
1t5eA	360	68.09	f.46.1.1	106436
3by6A	126	68.37		
1m07A	111	70.78	d.5.1.1	78328
1kqqA	139	71.05	a.4.3.1	72885
2h09A	155	71.15		
2gfnA	209	73.49	a.4.1.9,a.121.1.1	135101,135102
1ryaA	160	85.32	d.113.1.5	105122
1yk3A	210	86.46	d.108.1.1	123493
2e74D	179	87.84	b.33.1.1,f.23.12.1	132049,132050
3bjaA	139	88.11		
1utxA	66	88.51	a.35.1.3	108034
1adrA	76	89.03	a.35.1.2	17042