# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	7.83e-10	d.98.1.1	67267
2g2uB	165	8.27e-10	d.98.1.1	134541
1kqqA	139	11.01	a.4.3.1	72885
2grjA	192	13.84		
2h27A	73	18.76	a.4.13.2	135993
2o8xA	70	19.60		
3bddA	142	19.76		
2bv6A	142	21.25		
2gxgA	146	29.90		
1gvjA	146	29.91	a.4.5.21	90525
2h36X	112	33.39		
3bj6A	152	38.08		
2z99A	219	39.08		
2rbbA	141	43.28		
3broA	141	44.75		
2cx5A	158	44.98		
2oxgB	124	48.54		
2fbhA	146	48.63	a.4.5.28	133245
2r01A	210	50.02		
3boqA	160	61.58		
1vd6A	224	64.76	c.1.18.3	119991
1hkqA	132	65.44	a.4.5.10	83555
1j3wA	163	69.18	d.110.7.1	90833
3bjaA	139	69.95		
1ituA	369	77.37	c.1.9.7	71423
1wnaA	131	79.06	d.319.1.1	121091
2bv1A	145	79.31