# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	4.13e-09	d.98.1.1	134541
1jtgB	165	9.68e-09	d.98.1.1	67267
1l3kA	196	0.4286	d.58.7.1,d.58.7.1	73539,73540
1ha1	184	0.8300		
1zh5A	195	2.845	a.4.5.46,d.58.7.1	125073,125074
2h36X	112	4.670		
2ghpA	292	11.79	d.58.7.1,d.58.7.1,d.58.7.1	135184,135185,135186
2ej9A	237	12.20		
1fxlA	167	12.46	d.58.7.1,d.58.7.1	39183,39184
3bwlA	126	13.10		
1wdvA	152	17.92	d.116.1.1	114539
2gfaA	119	18.67	b.34.9.1,b.34.9.1	135089,135090
1ta8A	332	21.55	d.142.2.2	112375
2o38A	120	21.97		
2qfjA	216	22.41		
2b5aA	77	23.59	a.35.1.3	127882
1pbjA	125	25.83	d.37.1.1,d.37.1.1	94414,94415
1i27A	73	26.10	a.4.5.30	61555
2rerA	173	30.57		
1yavA	159	31.06	d.37.1.1,d.37.1.1	116595,116596
1rsgA	516	35.27		
2cro	71	35.65		
2a6cA	83	36.31	a.35.1.13	126236
2croA	71	38.04	a.35.1.2	17038
2dxuA	235	38.14		
1b3tA	147	38.21	d.58.8.1	39228
2z0xA	158	39.96		
1zybA	232	40.51	a.4.5.4,b.82.3.2	125815,125816
2yvyA	278	40.93		
2cg4A	152	41.07	a.4.5.32,d.58.4.2	130417,130418
1xkfA	133	41.32	d.37.1.1,d.37.1.1	122077,122078
2ewtA	71	43.38		
1hkqA	132	43.48	a.4.5.10	83555
2cxiA	348	43.99		
3c7jA	237	44.51		
1q1rA	431	46.17	c.3.1.5,c.3.1.5,d.87.1.1	95600,95601,95602
2pspA	106	47.77	g.16.1.1,g.16.1.1	44730,44731
1otjA	283	49.32	b.82.2.5	93517
2pvaA	345	51.71	d.153.1.3	41850
2vapA	364	52.43		
2ehzA	302	53.20		
1peaA	385	53.73	c.93.1.1	35662
2j0fA	482	54.95		
1s6lA	212	59.57		
3bemA	218	62.10		
2dbbA	151	62.19		
2cghA	268	62.85		
1wp5A	323	64.49	b.68.10.1	114780
2i7xA	717	67.16		
1pzgA	331	70.21	c.2.1.5,d.162.1.1	95425,95426
1r69A	69	70.46	a.35.1.2	17028
3broA	141	71.25		
1wqwA	235	71.57	b.34.1.1,d.104.1.2	121179,121180
1y7yA	74	74.28	a.35.1.3	122729
2v75A	104	76.90		
1st0A	337	79.57	d.13.1.3,d.246.1.1	98979,98980
2gfoA	396	80.22	d.3.1.9	135105
2gruA	368	80.96		
2ywkA	95	81.84		
2ouxA	286	82.68		
1b04A	318	82.86	d.142.2.2	41579
3cloA	258	82.93		
2ef7A	133	86.08		
1t2dA	322	87.71	c.2.1.5,d.162.1.1	99084,99085
3bz6A	183	89.03