Best Alignments for T0399

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1z1dA	2.5360e+01	1z1dA/T0399-1z1dA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.16
1wmxA	2.7076e+01	1wmxA/T0399-1wmxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.18.1.24
2choA	4.6535e+01	2choA/T0399-2choA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.246.1.1 c.1.8.10 d.92.2.3
2rddB	4.9540e+01	2rddB/T0399-2rddB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1yewA	5.5317e+01	1yewA/T0399-1yewA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1spvA	5.7042e+01	1spvA/T0399-1spvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.50.1.2
1ywyA	6.3815e+01	1ywyA/T0399-1ywyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.55.2.1
1fe0A	6.4724e+01	1fe0A/T0399-1fe0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.17.1
1n0qA	6.5947e+01	1n0qA/T0399-1n0qA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	k.37.1.1
1lshB	6.6787e+01	1lshB/T0399-1lshB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.7.1.1
2uubE	7.0224e+01	2uubE/T0399-2uubE-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.14.1.1 d.50.1.2
1tx9A	7.3386e+01	1tx9A/T0399-1tx9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.84.1.1
1cd31	7.6574e+01	1cd31/T0399-1cd31-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2dxqA	8.8595e+01	2dxqA/T0399-2dxqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2f8yA	9.5013e+01	2f8yA/T0399-2f8yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1h2sB	9.6412e+01	1h2sB/T0399-1h2sB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.13.1.1
3bw8A	1.0109e+02	3bw8A/T0399-3bw8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2fl4A	1.0150e+02	2fl4A/T0399-2fl4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.108.1.1
2dx6A	1.0264e+02	2dx6A/T0399-2dx6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1kpgA	1.0334e+02	1kpgA/T0399-1kpgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.66.1.18

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001