Best Alignments for T0399

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1ycsB	5.1777e+01	1ycsB/T0399-1ycsB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.211.1.1 b.34.2.1
1spvA	5.2087e+01	1spvA/T0399-1spvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.50.1.2
2igqA	5.3672e+01	2igqA/T0399-2igqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1cd31	5.7922e+01	1cd31/T0399-1cd31-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1yewA	5.9311e+01	1yewA/T0399-1yewA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2cthA	6.2150e+01	2cthA/T0399-2cthA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.138.1.1
1n71A	6.2366e+01	1n71A/T0399-1n71A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.108.1.1
1z1dA	6.7425e+01	1z1dA/T0399-1z1dA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.16
2i6vA	6.7972e+01	2i6vA/T0399-2i6vA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vhuA	6.9956e+01	1vhuA/T0399-1vhuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.50.1.2
1n0qA	7.0140e+01	1n0qA/T0399-1n0qA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	k.37.1.1
2rddB	7.0424e+01	2rddB/T0399-2rddB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1lshB	7.6258e+01	1lshB/T0399-1lshB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.7.1.1
1te5A	7.8386e+01	1te5A/T0399-1te5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.153.1.1
1mk4A	7.9704e+01	1mk4A/T0399-1mk4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.108.1.1
2rfmA	8.1073e+01	2rfmA/T0399-2rfmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1pdkB	8.1869e+01	1pdkB/T0399-1pdkB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.2.3.2
1yxhA	8.5922e+01	1yxhA/T0399-1yxhA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1u8bA	8.8889e+01	1u8bA/T0399-1u8bA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1h2sB	8.9614e+01	1h2sB/T0399-1h2sB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001