# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1spvA	184	8.378	c.50.1.2	98957
1vhuA	211	12.65	c.50.1.2	100703
2igqA	285	14.58		
2ixmA	303	23.05	a.268.1.1	137776
2cthA	107	24.40	a.138.1.1	19652
1ycsB	239	25.20	d.211.1.1,b.34.2.1	19155,24553
2i6vA	87	26.78		
1yewA	382	27.03		
1n0qA	93	29.44	k.37.1.1	79754
1lshB	319	31.69	f.7.1.1	74245
1hbnA	549	35.79	a.89.1.1,d.58.31.2	60898,60899
1bnkA	216	36.23	b.46.1.2	25765
1ewnA	219	37.31	b.46.1.2	25762
2rfmA	192	38.61		
1pdgA	109	38.62	g.17.1.1	44748
1mkkA	96	41.33	g.17.1.1	79240
1pdkB	157	43.97	b.2.3.2	22427
1mroA	548	46.57	a.89.1.1,d.58.31.2	18525,39443
1n71A	180	48.34	d.108.1.1	85370
2g62A	325	48.73	a.268.1.1	134685
2cwaA	263	48.94		
1yxhA	126	49.32		
1yocA	147	54.13	d.38.1.5	123778
1fe0A	68	54.58	d.58.17.1	39345
2uubE	162	54.82	d.14.1.1,d.50.1.2	139936,139937
1te5A	257	58.75	d.153.1.1	106795
1r9hA	135	59.89	d.26.1.1	97260
3b98A	475	60.21		
1a76A	326	61.95	a.60.7.1,c.120.1.2	18091,33361
1kmvA	186	61.97	c.71.1.1	72757
2q2gA	180	62.45		
1cc8A	73	63.05	d.58.17.1	39343
1kpgA	287	63.98	c.66.1.18	68735
1u8bA	133	64.91		
1mk4A	157	64.98	d.108.1.1	84979
1zgwA	139	65.09		
1aolA	228	66.88	b.20.1.1	23840
1b43A	340	67.85	a.60.7.1,c.120.1.2	18092,33362
1fltV	98	80.19	g.17.1.1	44751
1xmkA	79	81.02	a.4.5.19	122165
1wq8A	110	81.37	g.17.1.1	114832
2dlxA	153	81.57		
2e5sA	98	82.84		
2zcwA	202	83.17		
2ckwA	515	84.45		
2jabA	136	87.76		
1b06A	210	88.30	a.2.11.1,d.44.1.1	15740,38737