# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vhuA	211	13.86	c.50.1.2	100703
2igqA	285	14.04		
1spvA	184	15.40	c.50.1.2	98957
2cthA	107	16.59	a.138.1.1	19652
1ycsB	239	20.47	d.211.1.1,b.34.2.1	19155,24553
1te5A	257	23.46	d.153.1.1	106795
1yxhA	126	26.27		
1bnkA	216	26.43	b.46.1.2	25765
1n0qA	93	27.33	k.37.1.1	79754
1kpgA	287	29.25	c.66.1.18	68735
1ewnA	219	29.53	b.46.1.2	25762
2i6vA	87	30.96		
1hbnA	549	31.20	a.89.1.1,d.58.31.2	60898,60899
1mroA	548	32.92	a.89.1.1,d.58.31.2	18525,39443
2rfmA	192	33.51		
2dlxA	153	34.81		
1n71A	180	36.01	d.108.1.1	85370
1cd31	152	39.06		
3c19A	186	41.38		
2e5sA	98	41.72		
1zgwA	139	47.03		
1mk4A	157	47.41	d.108.1.1	84979
1tx9A	151	48.51	a.84.1.1	119383
1pdkB	157	50.45	b.2.3.2	22427
1u8bA	133	50.66		
2jabA	136	50.97		
1wurA	220	53.73	d.96.1.1	121309
1mkkA	96	55.32	g.17.1.1	79240
1pdgA	109	56.34	g.17.1.1	44748
1iroA	54	56.84	g.41.5.1	45223
1yocA	147	57.04	d.38.1.5	123778
1cc8A	73	58.60	d.58.17.1	39343
1kmvA	186	59.13	c.71.1.1	72757
1aolA	228	60.50	b.20.1.1	23840
2q2gA	180	63.88		
2ixmA	303	64.56	a.268.1.1	137776
1fe0A	68	64.97	d.58.17.1	39345
1a76A	326	64.98	a.60.7.1,c.120.1.2	18091,33361
1b43A	340	66.94	a.60.7.1,c.120.1.2	18092,33362
2uubE	162	69.57	d.14.1.1,d.50.1.2	139936,139937
1r9hA	135	72.90	d.26.1.1	97260
1z1dA	103	75.59	a.4.5.16	124351
1yewA	382	77.15		
1oy3D	282	78.16	d.211.1.1	87554
2ob0A	170	81.05		
1x9mA	698	85.26	c.55.3.5,e.8.1.1	114999,115000
2rfiA	285	85.60		
1ft9A	222	86.21	a.4.5.4,b.82.3.1	16107,28131
1wq8A	110	88.98	g.17.1.1	114832