# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2igqA 285 2.875 1lshB 319 3.372 f.7.1.1 74245 1spvA 184 4.914 c.50.1.2 98957 1tx9A 151 6.676 a.84.1.1 119383 1n0qA 93 7.172 k.37.1.1 79754 1cd31 152 7.309 1ycsB 239 9.313 d.211.1.1,b.34.2.1 19155,24553 1zgwA 139 10.71 2ixmA 303 11.36 a.268.1.1 137776 1u8bA 133 14.06 2jabA 136 14.78 2q2gA 180 14.83 1pdkB 157 14.86 b.2.3.2 22427 1aolA 228 15.52 b.20.1.1 23840 2cthA 107 16.40 a.138.1.1 19652 1a76A 326 18.10 a.60.7.1,c.120.1.2 18091,33361 2rfiA 285 18.46 1yxhA 126 18.85 2rfmA 192 21.65 1yd9A 193 22.04 c.50.1.2 122976 1iabA 200 22.20 d.92.1.8 40312 1kpgA 287 22.96 c.66.1.18 68735 2zcwA 202 24.44 1b43A 340 24.69 a.60.7.1,c.120.1.2 18092,33362 1vhuA 211 28.32 c.50.1.2 100703 1eqkA 102 28.93 d.17.1.2 37998 2g62A 325 29.86 a.268.1.1 134685 2vgeA 229 29.88 1mk4A 157 31.21 d.108.1.1 84979 1bnkA 216 31.43 b.46.1.2 25765 2covD 104 32.31 2dlxA 153 32.92 1r1fA 37 34.03 g.3.3.4 96815 1ewnA 219 34.86 b.46.1.2 25762 1r9hA 135 35.10 d.26.1.1 97260 1cc8A 73 36.49 d.58.17.1 39343 1ympA 135 37.72 2cohA 202 37.99 a.4.5.4,b.82.3.2 130677,130678 1bd8 156 38.62 1zl8A 53 40.78 a.194.1.1 125238 1sgpE 185 40.79 b.47.1.1 25816 2o7sA 523 40.80 1f76A 336 41.83 c.1.4.1 76160 1awcB 153 42.49 d.211.1.1 19156 2ckwA 515 42.52 1gnyA 153 42.84 b.18.1.11 65404 1dyoA 160 43.06 b.18.1.7 23771 2uubE 162 44.59 d.14.1.1,d.50.1.2 139936,139937 1yewA 382 46.09 1b4gA 30 48.20 j.12.1.1 46144 1ptqA 50 49.26 g.49.1.1 45349 1kmvA 186 50.07 c.71.1.1 72757 1ihbA 162 55.63 d.211.1.1 19161 1wdyA 285 56.66 d.211.1.1 114541 2jrpA 81 57.18 1z1dA 103 60.24 a.4.5.16 124351 1iwlA 182 62.59 b.125.1.1 83757 1n71A 180 62.74 d.108.1.1 85370 1bhp 45 62.78 2i6vA 87 63.24 1aj2 282 63.39 1a76 326 64.34 2yugA 155 65.31 1wurA 220 66.12 d.96.1.1 121309 1k1aA 241 67.42 d.211.1.1 67992 1yocA 147 69.85 d.38.1.5 123778 2dxqA 150 70.64 2eriA 31 73.03 1y74A 57 73.71 a.194.1.1 122679 1df6A 30 73.72 g.3.3.2 44078 1is8A 230 74.25 d.96.1.1 66321 2e5sA 98 75.68 1mx4A 168 75.94 d.211.1.1 79640 2ywiA 196 76.27 1d3kA 329 77.04 c.94.1.2 35889 1fe0A 68 78.31 d.58.17.1 39345 2qmwA 267 78.81 1tpgA 91 79.60 g.3.11.1,g.27.1.1 44325,44955 1utxA 66 81.51 a.35.1.3 108034 1xmkA 79 82.28 a.4.5.19 122165 1ywyA 74 82.47 b.55.2.1 124166 1mugA 168 82.56 c.18.1.2 31030 3sicI 107 82.72 d.84.1.1 40028 1dtdB 61 82.74 g.30.1.1 44962 1uf5A 303 83.34 d.160.1.2 107808 1te5A 257 85.26 d.153.1.1 106795 1oy3D 282 85.72 d.211.1.1 87554 2f8yA 223 85.75 1jvnA 555 86.79 c.1.2.1,c.23.16.1 67355,67356 1yyhA 253 86.84 2uubK 129 87.90 c.55.4.1 139942 2dg8A 193 89.53 1nxhA 126 89.68 a.200.1.1 92300