# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rfiA 285 0.2146 2o8jA 281 1.050 3bamA 213 4.332 c.52.1.3 33288 1bkcI 256 5.354 d.92.1.10 40334 2yxxA 386 6.266 1uumA 372 7.106 c.1.4.1 100010 1a76A 326 7.159 a.60.7.1,c.120.1.2 18091,33361 1f76A 336 7.228 c.1.4.1 76160 1b43A 340 7.349 a.60.7.1,c.120.1.2 18092,33362 1yewA 382 9.309 1en2A 89 10.94 g.3.1.1,g.3.1.1 44048,44049 1kit 757 11.38 1wcuA 153 11.99 1dyoA 160 12.19 b.18.1.7 23771 1cd31 152 13.11 1jdwA 423 13.43 d.126.1.2 41129 1y12A 165 15.11 b.157.1.1 122516 1crkA 380 15.75 a.83.1.1,d.128.1.2 18458,41193 1ulkA 126 16.51 g.3.1.1,g.3.1.1,g.3.1.1 99559,99560,99561 2rmcA 182 16.53 b.62.1.1 27491 2b0oE 301 17.91 1qhuA 460 19.72 b.66.1.1,b.66.1.1 27530,27531 2ikqA 270 20.65 1ecfA 504 22.47 c.61.1.1,d.153.1.1 34053,41820 1aj2 282 22.92 1h6yA 170 24.46 b.18.1.7 70904 1reqB 637 24.83 c.1.19.1,c.23.6.1 29621,31248 1ea9C 583 25.23 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 2iucA 375 25.58 2qmxA 283 26.82 2fqxA 318 30.27 1j31A 262 31.39 d.160.1.2 90808 1tcaA 317 32.86 c.69.1.17 34726 1sqgA 429 34.22 a.79.1.3,c.66.1.38 105912,105913 1kblA 873 34.54 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1n0qA 93 36.97 k.37.1.1 79754 2dumA 170 37.81 1igrA 478 38.73 c.10.2.5,c.10.2.5,g.3.9.1 30877,30878,44188 1dcqA 278 39.43 d.211.1.1,g.45.1.1 19178,45326 1ecfB 504 40.46 c.61.1.1,d.153.1.1 34054,41821 1bd8 156 40.66 1cc8A 73 41.35 d.58.17.1 39343 1s48A 609 41.75 e.8.1.4 98475 2qikA 285 41.95 1yyaA 250 42.10 1spvA 184 44.28 c.50.1.2 98957 2axtD 352 44.87 1jubA 311 45.41 c.1.4.1 90908 2gk4A 232 45.77 1txkA 498 46.18 b.1.18.2,b.30.5.9 107425,107426 1z2cB 383 46.23 a.118.1.23 124377 1lqwA 183 49.89 d.167.1.1 74210 2dp3A 257 50.72 1kpgA 287 51.41 c.66.1.18 68735 1z70X 311 52.37 d.169.1.7 124581 2ihoA 293 54.49 2cxaA 256 56.01 d.108.1.6 130993 1mpuA 138 56.80 d.169.1.1 85040 2rh1A 500 57.57 2pviA 157 57.81 c.52.1.6 33302 2v7kA 361 58.10 2e57A 637 58.77 1xl4A 301 59.94 b.1.18.16,f.14.1.1 115430,115431 1nthA 458 60.21 c.1.25.1 80730 1j08A 226 60.35 c.47.1.2,c.47.1.2 83855,83856 2ghsA 326 60.56 b.68.6.1 135209 2i6uA 307 61.39 2z8lA 208 62.06 2cohA 202 63.18 a.4.5.4,b.82.3.2 130677,130678 1xeoA 168 63.67 d.167.1.1 121913 1b9bA 255 65.09 c.1.1.1 28531 1oy3D 282 66.54 d.211.1.1 87554 1a76 326 68.09 2b9wA 424 68.33 2i6vA 87 69.89 1ihbA 162 70.58 d.211.1.1 19161 2yx1A 336 71.25 2okcA 445 72.48 1ojrA 274 74.23 c.74.1.1 93147 2ghtA 181 75.28 1fjgE 162 76.98 d.14.1.1,d.50.1.2 37553,38789 1xtoA 311 80.20 d.157.1.6 116030 1qycA 308 81.42 c.2.1.2 96581 1mk4A 157 83.12 d.108.1.1 84979 1pdkB 157 84.20 b.2.3.2 22427 1rx0A 393 84.48 a.29.3.1,e.6.1.1 98007,98008 1lmhA 184 84.85 d.167.1.1 74036 2yugA 155 87.00