# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igqA	285	12.63		
1ycsB	239	12.92	d.211.1.1,b.34.2.1	19155,24553
1spvA	184	16.67	c.50.1.2	98957
2i6vA	87	28.31		
1u8bA	133	33.27		
1n71A	180	33.33	d.108.1.1	85370
1yewA	382	36.78		
1lshB	319	36.99	f.7.1.1	74245
1kpgA	287	37.11	c.66.1.18	68735
1vhuA	211	37.23	c.50.1.2	100703
1n0qA	93	37.72	k.37.1.1	79754
2rfmA	192	37.84		
1f76A	336	38.93	c.1.4.1	76160
1zgwA	139	41.83		
1te5A	257	42.35	d.153.1.1	106795
1pdgA	109	44.58	g.17.1.1	44748
1kmvA	186	45.74	c.71.1.1	72757
2ixmA	303	47.10	a.268.1.1	137776
1yocA	147	47.57	d.38.1.5	123778
2cthA	107	47.75	a.138.1.1	19652
1mk4A	157	48.31	d.108.1.1	84979
1pdkB	157	50.01	b.2.3.2	22427
2uubE	162	50.76	d.14.1.1,d.50.1.2	139936,139937
1cd31	152	55.40		
2covD	104	56.37		
2az4A	429	57.26	d.157.1.10	127597
1hbnA	549	58.16	a.89.1.1,d.58.31.2	60898,60899
1mroA	548	58.30	a.89.1.1,d.58.31.2	18525,39443
1aj2	282	61.80		
1xmkA	79	62.20	a.4.5.19	122165
2zcwA	202	63.20		
1mkkA	96	67.77	g.17.1.1	79240
2rmzA	43	68.50		
2jabA	136	70.33		
1ewnA	219	73.08	b.46.1.2	25762
1ft9A	222	73.95	a.4.5.4,b.82.3.1	16107,28131
1z1dA	103	74.55	a.4.5.16	124351
1cc8A	73	76.08	d.58.17.1	39343
2dlxA	153	76.45		
1aolA	228	77.29	b.20.1.1	23840
1b43A	340	78.90	a.60.7.1,c.120.1.2	18092,33362
1dyoA	160	80.00	b.18.1.7	23771
1r9hA	135	80.79	d.26.1.1	97260
2g62A	325	83.38	a.268.1.1	134685
1bnkA	216	84.66	b.46.1.2	25765
2cohA	202	87.97	a.4.5.4,b.82.3.2	130677,130678
1a76A	326	88.11	a.60.7.1,c.120.1.2	18091,33361
2e5sA	98	88.41		
2dznA	228	88.41