# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igqA	285	12.54		
1ycsB	239	20.73	d.211.1.1,b.34.2.1	19155,24553
2i6vA	87	21.82		
2cthA	107	24.76	a.138.1.1	19652
1spvA	184	26.98	c.50.1.2	98957
1yewA	382	27.22		
1kpgA	287	34.29	c.66.1.18	68735
1lshB	319	34.52	f.7.1.1	74245
1vhuA	211	39.88	c.50.1.2	100703
1n0qA	93	40.62	k.37.1.1	79754
2rfmA	192	41.17		
1n71A	180	41.21	d.108.1.1	85370
1yocA	147	47.00	d.38.1.5	123778
1te5A	257	47.00	d.153.1.1	106795
1kmvA	186	48.51	c.71.1.1	72757
2dlxA	153	49.28		
1pdgA	109	51.06	g.17.1.1	44748
1mkkA	96	52.88	g.17.1.1	79240
1f76A	336	54.35	c.1.4.1	76160
2q2gA	180	54.66		
1cc8A	73	56.07	d.58.17.1	39343
1cd31	152	56.31		
1iabA	200	56.64	d.92.1.8	40312
1zgwA	139	57.32		
1mk4A	157	57.41	d.108.1.1	84979
1pdkB	157	60.25	b.2.3.2	22427
1r9hA	135	63.07	d.26.1.1	97260
3c19A	186	63.40		
1u8bA	133	64.99		
2az4A	429	66.59	d.157.1.10	127597
2e5sA	98	66.89		
2uubE	162	69.10	d.14.1.1,d.50.1.2	139936,139937
1xmkA	79	72.89	a.4.5.19	122165
1z1dA	103	74.14	a.4.5.16	124351
1tx9A	151	74.76	a.84.1.1	119383
1aolA	228	75.70	b.20.1.1	23840
2jabA	136	78.62		
1fe0A	68	79.15	d.58.17.1	39345
2zcwA	202	79.24		
1kx5C	128	80.06	a.22.1.1	77595
1yxhA	126	83.35		
2covD	104	84.90		
1ft9A	222	84.97	a.4.5.4,b.82.3.1	16107,28131
1hbnA	549	85.54	a.89.1.1,d.58.31.2	60898,60899
1mroA	548	85.75	a.89.1.1,d.58.31.2	18525,39443
1b43A	340	88.28	a.60.7.1,c.120.1.2	18092,33362
3b98A	475	89.52