# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igqA	285	7.441		
1spvA	184	16.21	c.50.1.2	98957
1n0qA	93	22.97	k.37.1.1	79754
2cthA	107	25.88	a.138.1.1	19652
1ycsB	239	28.43	d.211.1.1,b.34.2.1	19155,24553
2rfmA	192	31.49		
1f76A	336	32.77	c.1.4.1	76160
1kpgA	287	33.82	c.66.1.18	68735
1yewA	382	34.80		
1yxhA	126	38.44		
1mk4A	157	40.57	d.108.1.1	84979
1vhuA	211	41.75	c.50.1.2	100703
2dlxA	153	42.90		
1lshB	319	43.70	f.7.1.1	74245
2q2gA	180	44.15		
1cd31	152	45.47		
1zgwA	139	45.76		
3b98A	475	46.22		
2jabA	136	46.79		
1n71A	180	47.09	d.108.1.1	85370
1cc8A	73	48.21	d.58.17.1	39343
2rfiA	285	51.39		
1tx9A	151	53.50	a.84.1.1	119383
2ixmA	303	53.59	a.268.1.1	137776
2i6vA	87	55.53		
1iabA	200	57.21	d.92.1.8	40312
2zcwA	202	60.46		
2uubE	162	61.45	d.14.1.1,d.50.1.2	139936,139937
1u8bA	133	62.00		
1a76A	326	65.68	a.60.7.1,c.120.1.2	18091,33361
1pdkB	157	65.96	b.2.3.2	22427
1r9hA	135	70.82	d.26.1.1	97260
2covD	104	73.31		
1yocA	147	73.38	d.38.1.5	123778
1kx5C	128	78.54	a.22.1.1	77595
1xmkA	79	80.14	a.4.5.19	122165
1zl8A	53	81.61	a.194.1.1	125238
1aolA	228	82.85	b.20.1.1	23840
1mkkA	96	83.65	g.17.1.1	79240
1fe0A	68	86.65	d.58.17.1	39345
1kmvA	186	86.90	c.71.1.1	72757
1z1dA	103	87.37	a.4.5.16	124351
2e5sA	98	87.72		
1oy3D	282	87.88	d.211.1.1	87554
1te5A	257	89.58	d.153.1.1	106795