# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1n71A	180	10.12	d.108.1.1	85370
3c19A	186	20.25		
2a4nA	182	31.77	d.108.1.1	126159
1b87A	181	33.33	d.108.1.1	40797
1te5A	257	37.32	d.153.1.1	106795
1yxhA	126	39.78		
2az4A	429	40.28	d.157.1.10	127597
1aj2	282	46.17		
1mk4A	157	48.28	d.108.1.1	84979
1wixA	164	53.75	a.40.3.1	114683
1yewA	382	56.21		
1g5rA	196	59.08	c.37.1.11	32367
1a76A	326	59.11	a.60.7.1,c.120.1.2	18091,33361
1ycsB	239	60.30	d.211.1.1,b.34.2.1	19155,24553
2dlxA	153	60.54		
2ob0A	170	63.88		
1b43A	340	72.98	a.60.7.1,c.120.1.2	18092,33362
1iabA	200	77.95	d.92.1.8	40312
3c24A	286	79.34		
1z1dA	103	83.64	a.4.5.16	124351
2cwaA	263	86.00		
1aolA	228	87.83	b.20.1.1	23840