# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1wmxA	205	3.057	b.18.1.24	109418
2choA	716	3.608	a.246.1.1,c.1.8.10,d.92.2.3	130479,130480,130481
1z1dA	103	8.667	a.4.5.16	124351
1n0qA	93	11.89	k.37.1.1	79754
2dxqA	150	25.40		
2f8yA	223	27.11		
2uubE	162	28.48	d.14.1.1,d.50.1.2	139936,139937
2fl4A	149	29.84	d.108.1.1	133706
1ywyA	74	32.20	b.55.2.1	124166
1spvA	184	32.58	c.50.1.2	98957
3bkxA	275	35.24		
1kpgA	287	39.16	c.66.1.18	68735
2ge3A	170	40.11	d.108.1.1	135044
1pdgA	109	41.14	g.17.1.1	44748
1tiqA	180	42.74	d.108.1.1	107010
3bw8A	217	43.76		
1a8rA	221	45.30	d.96.1.1	40587
1n4qB	377	46.88	a.102.4.3	91636
2g62A	325	50.47	a.268.1.1	134685
1wq8A	110	52.17	g.17.1.1	114832
2fiaA	162	55.11	d.108.1.1	133514
1tx9A	151	59.51	a.84.1.1	119383
2d9zA	129	59.66		
1yd9A	193	59.85	c.50.1.2	122976
2cy2A	174	62.21	d.108.1.1	131016
1mk4A	157	63.49	d.108.1.1	84979
2arcA	164	67.25	b.82.4.1	28148
1yvoA	172	67.84	d.108.1.1	124106
2a5lA	200	72.25	c.23.5.8	126176
1wurA	220	77.78	d.96.1.1	121309
1vr8A	142	81.09	d.312.1.1	120445
1uohA	226	81.32	d.211.1.1	99690
1yr0A	175	83.05	d.108.1.1	123905
1e7wA	291	84.09	c.2.1.2	59373
2ys3A	137	85.91		
2ct5A	73	86.61	g.37.1.6	130790
1on0A	158	86.82	d.108.1.1	87095
2cntA	160	87.40		
2dx6A	159	88.31		
2fckA	181	89.80	d.108.1.1	133272