# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1wmxA 205 0.8128 b.18.1.24 109418 2choA 716 1.388 a.246.1.1,c.1.8.10,d.92.2.3 130479,130480,130481 1tx9A 151 2.575 a.84.1.1 119383 1n0qA 93 3.023 k.37.1.1 79754 1ywyA 74 7.122 b.55.2.1 124166 1spvA 184 7.127 c.50.1.2 98957 1yd9A 193 7.185 c.50.1.2 122976 2f8yA 223 9.252 1z1dA 103 10.16 a.4.5.16 124351 2uubE 162 13.95 d.14.1.1,d.50.1.2 139936,139937 2dxqA 150 15.13 2ywiA 196 16.17 1uohA 226 17.92 d.211.1.1 99690 1b4gA 30 20.07 j.12.1.1 46144 1bd8A 156 22.05 d.211.1.1 19157 2ofzA 138 22.72 1srvA 145 23.29 c.8.5.1 30817 2dx6A 159 24.76 1fjgE 162 25.73 d.14.1.1,d.50.1.2 37553,38789 2oucA 142 29.52 2jabA 136 30.73 2g62A 325 32.17 a.268.1.1 134685 1bd8 156 32.54 1kid 203 32.85 1r1fA 37 33.80 g.3.3.4 96815 2fl4A 149 34.67 d.108.1.1 133706 1fe0A 68 34.73 d.58.17.1 39345 2ge3A 170 35.80 d.108.1.1 135044 1ihbA 162 37.54 d.211.1.1 19161 1a8rA 221 37.64 d.96.1.1 40587 2rduA 387 37.92 1df6A 30 38.64 g.3.3.2 44078 2btlA 134 38.77 b.148.1.1 129154 2cy2A 174 38.83 d.108.1.1 131016 2gdjA 264 41.11 c.37.1.11 135018 1p4cA 380 42.56 c.1.4.1 94100 2pr7A 137 43.98 2fiaA 162 44.37 d.108.1.1 133514 1tiqA 180 45.83 d.108.1.1 107010 1u8bA 133 46.06 2qmxA 283 47.17 2rfmA 192 47.48 1whbA 157 47.72 c.46.1.4 114639 1cc8A 73 48.21 d.58.17.1 39343 2covD 104 48.22 2uubK 129 49.28 c.55.4.1 139942 1lshB 319 49.66 f.7.1.1 74245 1on0A 158 50.62 d.108.1.1 87095 2q8nA 460 51.11 1wdyA 285 51.13 d.211.1.1 114541 1rzsA 61 52.42 a.35.1.2 105139 1w0mA 226 53.89 c.1.1.1 109027 1mk4A 157 54.41 d.108.1.1 84979 2ys3A 137 55.55 1vr8A 142 57.30 d.312.1.1 120445 2etbA 256 57.44 1n0wA 243 60.76 c.37.1.11 79772 1yvoA 172 64.12 d.108.1.1 124106 1gnyA 153 64.73 b.18.1.11 65404 1nxhA 126 65.46 a.200.1.1 92300 1kpgA 287 66.19 c.66.1.18 68735 1dtdB 61 66.28 g.30.1.1 44962 3bw8A 217 66.55 1cc1S 283 67.73 e.19.1.1 43313 1ycsB 239 68.95 d.211.1.1,b.34.2.1 19155,24553 2bayA 61 69.46 g.44.1.2 128251 2sicI 107 73.11 d.84.1.1 40031 2h6rA 219 73.31 1sdiA 213 73.71 a.198.1.1 105437 2yzsA 315 76.02 1xn5A 146 76.92 d.129.3.5 115574 3butA 136 78.31 2r48A 106 79.45 2hb0A 369 79.64 1wurA 220 81.21 d.96.1.1 121309 2a2kA 175 81.60 1yr0A 175 82.63 d.108.1.1 123905 1rgyA 360 82.64 e.3.1.1 97456 2bxxA 134 83.78 b.148.1.1 129446 1nslA 184 84.61 d.108.1.1 86137 1ukfA 188 85.09 d.3.1.10 99488 2fsrA 195 85.27 d.108.1.1 134036 1kjlA 146 85.32 b.29.1.3 118689 2a5lA 200 85.55 c.23.5.8 126176 1ijxA 127 86.22 a.141.1.1 62511 1fjgK 129 86.30 c.55.4.1 33733 2fckA 181 87.03 d.108.1.1 133272 1qnrA 344 87.75 c.1.8.3 28834 1x47A 98 88.12 d.50.1.1 121680 2dp3A 257 88.70 2rddB 37 88.84 1ymkA 175 89.00 c.46.1.1 123699 2dr3A 247 89.49 2j6aA 141 89.71 1h9dB 134 89.75 b.54.1.1 60822