# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1n0qA	93	5.267	k.37.1.1	79754
1z1dA	103	6.624	a.4.5.16	124351
2choA	716	7.074	a.246.1.1,c.1.8.10,d.92.2.3	130479,130480,130481
1wmxA	205	9.081	b.18.1.24	109418
2f8yA	223	14.13		
1f0nA	285	23.30	c.69.1.3	34636
1spvA	184	28.74	c.50.1.2	98957
1e7wA	291	33.57	c.2.1.2	59373
3bqoA	211	33.72		
3bw8A	217	33.89		
2uubE	162	34.28	d.14.1.1,d.50.1.2	139936,139937
2g62A	325	34.28	a.268.1.1	134685
3bkxA	275	37.43		
1yewA	382	39.82		
2dxqA	150	42.51		
1pdgA	109	45.53	g.17.1.1	44748
1bd8A	156	46.94	d.211.1.1	19157
1kpgA	287	48.81	c.66.1.18	68735
1h6oA	204	49.32	a.146.1.1	60689
1fjgE	162	50.85	d.14.1.1,d.50.1.2	37553,38789
2rddB	37	52.43		
1ywyA	74	52.85	b.55.2.1	124166
1uohA	226	55.32	d.211.1.1	99690
1yd9A	193	58.23	c.50.1.2	122976
1eyhA	144	58.74	a.118.9.1	19214
2fl4A	149	64.35	d.108.1.1	133706
1fe0A	68	64.43	d.58.17.1	39345
1ojqA	212	64.97	d.166.1.1	93146
1ihbA	162	66.78	d.211.1.1	19161
1tx9A	151	66.80	a.84.1.1	119383
2ge3A	170	66.95	d.108.1.1	135044
2fiaA	162	67.16	d.108.1.1	133514
2covD	104	67.66		
2jabA	136	71.77		
2sicI	107	78.08	d.84.1.1	40031
1tiqA	180	81.68	d.108.1.1	107010
1afpA	51	85.07	g.26.1.1	44947
1xmkA	79	88.09	a.4.5.19	122165
2dx6A	159	88.39		
1on0A	158	89.21	d.108.1.1	87095
2cntA	160	89.79