# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2choA	716	4.273	a.246.1.1,c.1.8.10,d.92.2.3	130479,130480,130481
1wmxA	205	7.399	b.18.1.24	109418
1n0qA	93	8.441	k.37.1.1	79754
1z1dA	103	10.39	a.4.5.16	124351
2f8yA	223	17.64		
1f0nA	285	27.97	c.69.1.3	34636
1spvA	184	35.98	c.50.1.2	98957
1kpgA	287	36.84	c.66.1.18	68735
3bw8A	217	37.95		
2uubE	162	38.58	d.14.1.1,d.50.1.2	139936,139937
2dxqA	150	38.94		
3bkxA	275	39.06		
1pdgA	109	40.33	g.17.1.1	44748
2fl4A	149	49.47	d.108.1.1	133706
3bqoA	211	49.64		
2g62A	325	50.45	a.268.1.1	134685
2rddB	37	50.71		
1e7wA	291	52.16	c.2.1.2	59373
2ge3A	170	53.98	d.108.1.1	135044
2fiaA	162	54.15	d.108.1.1	133514
1fe0A	68	59.49	d.58.17.1	39345
1yewA	382	63.30		
1tiqA	180	65.77	d.108.1.1	107010
1fjgE	162	69.73	d.14.1.1,d.50.1.2	37553,38789
1mk4A	157	71.16	d.108.1.1	84979
1tx9A	151	71.27	a.84.1.1	119383
1yd9A	193	71.65	c.50.1.2	122976
2covD	104	73.48		
1h6oA	204	73.92	a.146.1.1	60689
1ywyA	74	73.95	b.55.2.1	124166
1uohA	226	76.99	d.211.1.1	99690
2dx6A	159	77.76		
1bd8A	156	78.26	d.211.1.1	19157
2euiA	153	79.23	d.108.1.1	132387
1on0A	158	81.47	d.108.1.1	87095
1yr0A	175	82.09	d.108.1.1	123905
2cy2A	174	83.39	d.108.1.1	131016
1cc8A	73	84.35	d.58.17.1	39343
1chkA	238	84.71	d.2.1.7	36999
1ojqA	212	87.03	d.166.1.1	93146
1eyhA	144	87.04	a.118.9.1	19214
1yvoA	172	87.93	d.108.1.1	124106
1wq8A	110	89.09	g.17.1.1	114832
1ihbA	162	89.89	d.211.1.1	19161