# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2choA	716	4.090	a.246.1.1,c.1.8.10,d.92.2.3	130479,130480,130481
1wmxA	205	6.853	b.18.1.24	109418
1z1dA	103	7.187	a.4.5.16	124351
1n0qA	93	7.498	k.37.1.1	79754
1f0nA	285	20.66	c.69.1.3	34636
2f8yA	223	20.78		
1spvA	184	27.06	c.50.1.2	98957
2uubE	162	28.90	d.14.1.1,d.50.1.2	139936,139937
3bkxA	275	30.80		
3bw8A	217	34.54		
1e7wA	291	38.84	c.2.1.2	59373
2dxqA	150	42.20		
1pdgA	109	43.17	g.17.1.1	44748
3bqoA	211	43.95		
2fl4A	149	46.96	d.108.1.1	133706
1fjgE	162	47.33	d.14.1.1,d.50.1.2	37553,38789
2rddB	37	48.45		
1kpgA	287	48.75	c.66.1.18	68735
2g62A	325	48.80	a.268.1.1	134685
2covD	104	51.54		
1yd9A	193	54.38	c.50.1.2	122976
2ge3A	170	54.68	d.108.1.1	135044
1ywyA	74	58.13	b.55.2.1	124166
2fiaA	162	60.21	d.108.1.1	133514
1uohA	226	61.64	d.211.1.1	99690
1bd8A	156	64.44	d.211.1.1	19157
1yewA	382	67.75		
1tiqA	180	68.00	d.108.1.1	107010
1fe0A	68	68.85	d.58.17.1	39345
2dx6A	159	70.90		
1h6oA	204	71.17	a.146.1.1	60689
1ojqA	212	71.62	d.166.1.1	93146
1chkA	238	74.06	d.2.1.7	36999
1eyhA	144	75.92	a.118.9.1	19214
1mk4A	157	76.45	d.108.1.1	84979
2d9zA	129	78.24		
1on0A	158	78.61	d.108.1.1	87095
1tx9A	151	80.01	a.84.1.1	119383
2euiA	153	83.28	d.108.1.1	132387
1yr0A	175	84.09	d.108.1.1	123905
1ihbA	162	84.57	d.211.1.1	19161
1cc8A	73	87.74	d.58.17.1	39343
2cntA	160	89.09