# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2choA	716	3.765	a.246.1.1,c.1.8.10,d.92.2.3	130479,130480,130481
1wmxA	205	4.391	b.18.1.24	109418
1z1dA	103	8.119	a.4.5.16	124351
1n0qA	93	10.59	k.37.1.1	79754
2uubE	162	18.87	d.14.1.1,d.50.1.2	139936,139937
2f8yA	223	21.43		
1fjgE	162	28.72	d.14.1.1,d.50.1.2	37553,38789
2fl4A	149	29.71	d.108.1.1	133706
2dxqA	150	32.27		
2covD	104	35.67		
3bw8A	217	35.81		
2rddB	37	39.41		
1n4qB	377	40.44	a.102.4.3	91636
1ywyA	74	43.94	b.55.2.1	124166
1spvA	184	44.00	c.50.1.2	98957
1fe0A	68	44.43	d.58.17.1	39345
1pdgA	109	45.72	g.17.1.1	44748
1kpgA	287	46.02	c.66.1.18	68735
2g62A	325	49.92	a.268.1.1	134685
1f0nA	285	50.79	c.69.1.3	34636
2ge3A	170	55.34	d.108.1.1	135044
3bkxA	275	56.27		
1mk4A	157	61.24	d.108.1.1	84979
1uohA	226	62.43	d.211.1.1	99690
2fiaA	162	65.13	d.108.1.1	133514
2cy2A	174	67.17	d.108.1.1	131016
2ywiA	196	67.30		
1tiqA	180	68.57	d.108.1.1	107010
2d9zA	129	71.45		
1wq8A	110	78.33	g.17.1.1	114832
1tx9A	151	78.75	a.84.1.1	119383
1bd8A	156	82.08	d.211.1.1	19157
1u8bA	133	82.86		
2sicI	107	85.39	d.84.1.1	40031
1on0A	158	87.10	d.108.1.1	87095