# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ghtA	181	3.829		
1reqB	637	10.21	c.1.19.1,c.23.6.1	29621,31248
2rfiA	285	11.89		
1f0nA	285	14.16	c.69.1.3	34636
1wcuA	153	14.51		
2b0oE	301	14.94		
2icsA	379	18.00	b.92.1.8,c.1.9.14	137241,137242
2f42A	179	19.59		
1fjgE	162	19.60	d.14.1.1,d.50.1.2	37553,38789
2qmxA	283	19.60		
2euiA	153	21.59	d.108.1.1	132387
2v9kA	530	22.57		
1t8oA	245	23.47	b.47.1.2	119187
1lwbA	122	23.78	a.133.1.3	84728
2hq6A	185	24.66		
1jaeA	471	24.81	b.71.1.1,c.1.8.1	27773,28760
1chkA	238	25.35	d.2.1.7	36999
2b5nA	323	26.54		
2f91A	237	27.03	b.47.1.2	133150
2qmjA	870	27.85		
2f8yA	223	28.34		
1ta0A	197	28.46	c.108.1.16	106729
1vnsA	609	29.94	a.111.1.3	19061
2cxaA	256	30.74	d.108.1.6	130993
2vr4A	846	31.25		
1n0qA	93	31.29	k.37.1.1	79754
1f7zA	233	31.38	b.47.1.2	59681
2b5eA	504	32.82	c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2	127888,127889,127890,127891
1s4cA	155	33.19	b.82.2.7	118860
2bmwA	304	35.83	b.43.4.2,c.25.1.1	128815,128816
1d3gA	367	36.18	c.1.4.1	28600
2dp3A	257	36.66		
2p3uB	233	38.16		
1qj4A	257	38.56	c.69.1.20	34796
2hs8A	402	38.81		
1mtzA	293	39.30	c.69.1.7	79467
2debA	653	41.63		
1z9nA	177	41.93		
2f5vA	595	42.77	c.3.1.2,d.16.1.1	133010,133011
2o8jA	281	43.77		
2p9wA	334	44.39		
1z9pA	155	45.81		
3c0bA	334	45.91		
2a6hA	315	46.75	d.74.3.1,d.181.1.1	126260,126261
2qr3A	140	46.90		
1z1dA	103	46.90	a.4.5.16	124351
1y44A	320	47.73	d.157.1.7	122608
2dexX	671	48.71	b.2.9.1,b.6.1.6,d.126.1.5	131436,131437,131438
1pmhX	185	49.54	b.18.1.18	104193
2eu9A	355	51.17		
2rddB	37	51.38		
1xeoA	168	51.64	d.167.1.1	121913
1d8wA	426	53.13	c.1.15.2	29394
2ghcX	261	53.43		
1mmlA	265	53.67	e.8.1.2	43015
1cc8A	73	54.20	d.58.17.1	39343
1f46A	140	54.65	d.129.4.1	59643
1my7A	114	54.91	b.1.18.1	79675
3coxA	507	55.56	c.3.1.2,d.16.1.1	30332,37863
1sw2A	275	56.54	c.94.1.1	106064
3bdwA	123	56.56		
1tiqA	180	57.29	d.108.1.1	107010
1couA	85	57.85	g.22.1.1	44896
2h7cA	542	58.17	c.69.1.1	136207
2z7xB	520	60.79		
2j22A	148	62.45		
2oucA	142	64.93		
1tcaA	317	65.38	c.69.1.17	34726
2oycA	306	67.03		
1txkA	498	67.94	b.1.18.2,b.30.5.9	107425,107426
2r3aA	300	67.99		
1gpeA	587	70.58	c.3.1.2,d.16.1.1	30387,37951
1tt0A	623	70.73		
2quqA	562	71.73		
1ju2A	536	72.59	c.3.1.2,d.16.1.1	77169,77170
1jsdA	319	72.76	b.19.1.2	63258
2f37A	251	74.25		
1uteA	313	74.60	d.159.1.1	42078
1r88A	280	76.36	c.69.1.3	97219
1yliA	153	77.91	d.38.1.1	123651
2hjeA	221	81.60		
2h4aA	325	83.47		
2eaqA	90	86.53		
2yx1A	336	87.28		
2chdA	142	87.59		
2guyA	478	88.25	b.71.1.1,c.1.8.1	135754,135755
2uubI	128	88.61		
1iloA	77	89.24	c.47.1.1	66205
2evvA	207	89.68