# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2choA	716	0.9813	a.246.1.1,c.1.8.10,d.92.2.3	130479,130480,130481
1wmxA	205	2.739	b.18.1.24	109418
1z1dA	103	9.169	a.4.5.16	124351
1n0qA	93	10.19	k.37.1.1	79754
2uubE	162	17.97	d.14.1.1,d.50.1.2	139936,139937
2f8yA	223	20.62		
2covD	104	22.10		
2rddB	37	24.03		
3bw8A	217	28.95		
1kpgA	287	29.48	c.66.1.18	68735
1fjgE	162	31.46	d.14.1.1,d.50.1.2	37553,38789
1spvA	184	35.28	c.50.1.2	98957
1f0nA	285	35.62	c.69.1.3	34636
1wq8A	110	37.44	g.17.1.1	114832
3bkxA	275	38.28		
2g62A	325	39.64	a.268.1.1	134685
1n4qB	377	41.13	a.102.4.3	91636
1ywyA	74	42.05	b.55.2.1	124166
2fl4A	149	42.15	d.108.1.1	133706
1pdgA	109	43.31	g.17.1.1	44748
2dxqA	150	51.63		
1fe0A	68	56.48	d.58.17.1	39345
1e7wA	291	56.82	c.2.1.2	59373
2d9zA	129	57.43		
1vr8A	142	64.56	d.312.1.1	120445
1uohA	226	66.71	d.211.1.1	99690
2ywiA	196	79.81		
1u8bA	133	80.30		
1cc8A	73	81.07	d.58.17.1	39343
2sicI	107	82.18	d.84.1.1	40031
1bd8A	156	86.00	d.211.1.1	19157
2ge3A	170	87.97	d.108.1.1	135044
1tx9A	151	88.20	a.84.1.1	119383
1mk4A	157	89.20	d.108.1.1	84979
1gnyA	153	89.99	b.18.1.11	65404