# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1z1dA	103	21.43	a.4.5.16	124351
2rddB	37	28.19		
2d9zA	129	31.01		
2choA	716	34.07	a.246.1.1,c.1.8.10,d.92.2.3	130479,130480,130481
1rm6B	324	37.88	d.87.2.1,d.145.1.3	111874,111875
2ge3A	170	39.37	d.108.1.1	135044
1chkA	238	41.01	d.2.1.7	36999
1h2sB	60	43.63	f.13.1.1	76579
1yewA	382	47.49		
3bw8A	217	47.55		
1ywyA	74	50.14	b.55.2.1	124166
1wmxA	205	50.53	b.18.1.24	109418
1ktbA	405	54.74	b.71.1.1,c.1.8.1	72960,72961
2hb5A	164	59.69		
1tiqA	180	62.57	d.108.1.1	107010
1mk4A	157	64.15	d.108.1.1	84979
2dxqA	150	66.00		
1ojqA	212	66.08	d.166.1.1	93146
2fl4A	149	72.23	d.108.1.1	133706
1yvoA	172	74.02	d.108.1.1	124106
1fe0A	68	74.21	d.58.17.1	39345
1yloA	348	75.08	b.49.3.1,c.56.5.4	123659,123660
2cy2A	174	76.68	d.108.1.1	131016
1yr0A	175	77.11	d.108.1.1	123905
2ys3A	137	78.84		
2fiaA	162	82.60	d.108.1.1	133514