# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jy5A	212	3.733	d.124.1.1	71940
1mkfA	382	8.469	b.116.1.1	79232
2r6vA	191	9.844		
2oj5A	165	13.00		
1peaA	385	13.85	c.93.1.1	35662
3bkxA	275	22.87		
1ym0A	238	24.55		
2cjqA	720	26.50		
1ywyA	74	28.91	b.55.2.1	124166
1m9uA	241	29.40	b.47.1.2	74601
1uscA	178	29.50	b.45.1.2	99860
1dtdB	61	30.46	g.30.1.1	44962
1pea	385	30.66		
1iybA	208	30.73	d.124.1.1	90720
1zhvA	134	31.43	d.58.18.8,d.58.18.8	125109,125110
1ewnA	219	32.47	b.46.1.2	25762
2d73A	738	32.73		
1tvlA	454	33.53	c.1.16.4	107366
1vd3A	217	35.91		
2i79A	172	36.04		
1kid	203	36.46		
1kzlA	208	37.30	b.43.4.3,b.43.4.3	77635,77636
1hj8A	222	38.66	b.47.1.2	65844
1h2eA	207	38.72	c.60.1.1	70857
1yw1A	442	40.29	c.1.16.4	124130
2b81A	323	42.74		
1zrhA	274	44.04		
1iooA	196	44.77	d.124.1.1	71250
2e5pA	68	45.56		
2asuB	234	46.02		
1ucdA	190	46.59	d.124.1.1	107767
2ov7A	137	47.87		
1o1yA	239	48.90	c.23.16.1	86554
1r9cA	139	49.00	d.32.1.2	97255
1nn6A	228	51.09	b.47.1.2	85893
2yy3A	91	54.41		
1g79A	218	57.39	b.45.1.1	25752
1p3hA	99	58.09	b.35.1.1	87734
3b5mA	205	62.19		
1ekbB	235	64.27	b.47.1.2	26282
1qhfA	240	64.74	c.60.1.1	33960
1mqvA	125	66.51	a.24.3.2	79415
1foeA	377	66.68	a.87.1.1,b.55.1.1	18517,26969
2r0lA	248	68.58		
1kkeA	210	68.82	b.83.1.2,b.21.1.2	68669,68670
2pd0A	223	69.06		
2pqxA	245	72.55		
2ddfA	257	74.34		
1eq9A	222	74.91	b.47.1.2	26068
1kidA	203	75.27	c.8.5.1	30771
2gw4B	162	76.19		
1vrmA	325	77.37	d.96.2.1	120472
1bo4A	168	77.98	d.108.1.1	40798
1sglA	209	80.54	d.124.1.1	105536
1ya0A	497	82.50	a.118.8.1	122785
1gpmA	525	82.63	c.23.16.1,c.26.2.1,d.52.2.1	31405,31608,38826
1wl8A	189	82.79	c.23.16.1	120997
1h9hE	223	88.70	b.47.1.2	103810