# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1wmxA	205	2.654	b.18.1.24	109418
1yewA	382	3.541		
2dx6A	159	9.646		
1lshB	319	13.39	f.7.1.1	74245
1spvA	184	14.11	c.50.1.2	98957
1cd31	152	19.03		
2uubE	162	20.07	d.14.1.1,d.50.1.2	139936,139937
2afcA	168	23.58	c.50.1.2	126676
2dtrA	226	24.19	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1njrA	284	24.94	c.50.1.2	103858
1ywyA	74	26.54	b.55.2.1	124166
1mkkA	96	27.12	g.17.1.1	79240
1j0pA	108	30.43	a.138.1.1	90743
1fe0A	68	35.31	d.58.17.1	39345
2p5qA	170	36.23		
1dpuA	99	41.71	a.4.5.16	16150
1v1pA	211	42.77	b.40.2.2,d.15.6.1	108268,108269
1fjgK	129	45.48	c.55.4.1	33733
1yd9A	193	47.47	c.50.1.2	122976
1elkA	157	53.39	a.118.9.2	19217
1tx9A	151	57.31	a.84.1.1	119383
2hb0A	369	57.60		
1z1dA	103	59.59	a.4.5.16	124351
2ahmE	203	60.88	d.302.1.1	126764
2r3aA	300	61.21		
1vhsA	175	61.51	d.108.1.1	100698
1aw8A	24	65.74	b.52.2.1	26901
1wq8A	110	66.20	g.17.1.1	114832
1vr8A	142	66.53	d.312.1.1	120445
2ebbA	101	69.18		
1dyoA	160	74.39	b.18.1.7	23771
1zgwA	139	75.28		
1nlqA	108	76.63	b.121.3.1	85853
1wurA	220	76.74	d.96.1.1	121309
2zcwA	202	77.58		
1ympA	135	77.73		
1ziwA	680	85.65		
1wcuA	153	88.32		
2z3qB	107	89.35