# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1lshB	319	0.9850	f.7.1.1	74245
1fjgK	129	1.533	c.55.4.1	33733
1wmxA	205	1.805	b.18.1.24	109418
1cd31	152	3.980		
1spvA	184	4.426	c.50.1.2	98957
1v1pA	211	4.839	b.40.2.2,d.15.6.1	108268,108269
2dx6A	159	5.574		
1tx9A	151	6.329	a.84.1.1	119383
2bcoA	350	8.412	c.56.5.7	128302
1ywyA	74	9.155	b.55.2.1	124166
1yewA	382	12.93		
1yd9A	193	14.85	c.50.1.2	122976
1njrA	284	15.00	c.50.1.2	103858
2uubE	162	15.13	d.14.1.1,d.50.1.2	139936,139937
1fe0A	68	16.56	d.58.17.1	39345
1ympA	135	17.17		
2r3aA	300	18.47		
1j0pA	108	19.02	a.138.1.1	90743
2fsrA	195	19.86	d.108.1.1	134036
2p5qA	170	20.48		
2hb0A	369	23.59		
1b4gA	30	23.79	j.12.1.1	46144
2zcwA	202	25.84		
2b8wA	328	27.74		
1vhsA	175	28.28	d.108.1.1	100698
2dtrA	226	28.44	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1zgwA	139	30.14		
1r1fA	37	30.29	g.3.3.4	96815
2qmlA	198	30.38		
1nlqA	108	30.91	b.121.3.1	85853
2yzsA	315	30.99		
2f8yA	223	31.11		
2covD	104	32.40		
1zr5A	214	33.43	c.50.1.2	125525
2z10A	194	34.71		
2rbdA	171	38.45		
1srvA	145	40.73	c.8.5.1	30817
1fjgE	162	41.10	d.14.1.1,d.50.1.2	37553,38789
2pdoA	144	41.19		
1t3kA	152	41.27	c.46.1.1	106357
3blnA	143	43.46		
1dyoA	160	44.71	b.18.1.7	23771
1yphC	131	44.81		
1ym0A	238	47.09		
2afcA	168	47.16	c.50.1.2	126676
2r48A	106	48.48		
1awcB	153	48.68	d.211.1.1	19156
1aw7A	194	48.96	b.40.2.2,d.15.6.1	25164,37753
2h6rA	219	51.07		
1utxA	66	54.14	a.35.1.3	108034
2q2gA	180	54.83		
2ofzA	138	55.02		
1elkA	157	55.56	a.118.9.2	19217
1nslA	184	57.35	d.108.1.1	86137
1n0qA	93	57.91	k.37.1.1	79754
2q0yA	153	59.76		
1dtdB	61	61.07	g.30.1.1	44962
1kid	203	61.66		
2qmxA	283	63.95		
2pr7A	137	64.67		
2b5aA	77	65.39	a.35.1.3	127882
2djlA	314	67.20		
1rwjA	82	68.34	a.138.1.1	105114
2r4qA	106	68.49		
3c5tA	122	69.68		
1sfxA	109	70.25	a.4.5.50	105505
1w0mA	226	71.44	c.1.1.1	109027
2q8nA	460	73.40		
1l6hA	69	74.85	a.52.1.1	77723
2btlA	134	77.66	b.148.1.1	129154
2ob0A	170	77.78		
1gnyA	153	78.61	b.18.1.11	65404
1u8bA	133	79.57		
2rfmA	192	80.65		
1rsgA	516	80.82		
1y7yA	74	81.31	a.35.1.3	122729
1yyhA	253	81.66		
2jabA	136	81.92		
2bxxA	134	82.69	b.148.1.1	129446
1mkkA	96	83.92	g.17.1.1	79240
1df6A	30	84.06	g.3.3.2	44078
2ahmE	203	84.56	d.302.1.1	126764
1yreA	197	85.11	d.108.1.1	123919
2r7hA	177	86.29		
1vjnA	220	87.26	d.157.1.4	100825