# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yewA	382	2.212		
1lshB	319	4.840	f.7.1.1	74245
1wmxA	205	13.57	b.18.1.24	109418
2dx6A	159	18.75		
1spvA	184	19.70	c.50.1.2	98957
1elkA	157	21.35	a.118.9.2	19217
1fjgK	129	23.51	c.55.4.1	33733
1cd31	152	28.54		
2p5qA	170	29.06		
1j0pA	108	29.57	a.138.1.1	90743
1dpuA	99	32.14	a.4.5.16	16150
1fe0A	68	33.38	d.58.17.1	39345
2uubE	162	41.61	d.14.1.1,d.50.1.2	139936,139937
1chkA	238	42.68	d.2.1.7	36999
2qmlA	198	46.02		
1z1dA	103	47.12	a.4.5.16	124351
1vhsA	175	48.60	d.108.1.1	100698
1uayA	242	49.77	c.2.1.2	88390
1l6hA	69	51.85	a.52.1.1	77723
1nlqA	108	53.46	b.121.3.1	85853
1h6oA	204	53.80	a.146.1.1	60689
1v1pA	211	55.63	b.40.2.2,d.15.6.1	108268,108269
3bqoA	211	57.90		
2afcA	168	64.81	c.50.1.2	126676
2zcwA	202	66.88		
1ziwA	680	69.12		
1dxrH	258	72.65	b.41.1.1,f.23.10.1	25456,43433
1mkkA	96	76.37	g.17.1.1	79240
1eyhA	144	76.64	a.118.9.1	19214
1ywyA	74	78.18	b.55.2.1	124166
2fsrA	195	79.63	d.108.1.1	134036
2dtrA	226	83.58	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2sicI	107	85.02	d.84.1.1	40031
1njrA	284	85.16	c.50.1.2	103858
2c8eE	211	86.55		
3blnA	143	88.70		
2covD	104	89.84