# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yewA	382	2.536		
1lshB	319	4.417	f.7.1.1	74245
1wmxA	205	8.272	b.18.1.24	109418
1spvA	184	16.29	c.50.1.2	98957
2dx6A	159	18.42		
1elkA	157	20.29	a.118.9.2	19217
1fjgK	129	24.02	c.55.4.1	33733
1v1pA	211	26.53	b.40.2.2,d.15.6.1	108268,108269
1fe0A	68	26.72	d.58.17.1	39345
1dpuA	99	33.13	a.4.5.16	16150
1j0pA	108	33.40	a.138.1.1	90743
2p5qA	170	36.28		
1mkkA	96	36.85	g.17.1.1	79240
2uubE	162	40.13	d.14.1.1,d.50.1.2	139936,139937
1cd31	152	40.46		
1rsgA	516	41.15		
1nlqA	108	41.53	b.121.3.1	85853
1chkA	238	43.28	d.2.1.7	36999
1l6hA	69	43.61	a.52.1.1	77723
1jaeA	471	49.90	b.71.1.1,c.1.8.1	27773,28760
2zcwA	202	51.77		
1ywyA	74	54.62	b.55.2.1	124166
1z1dA	103	56.50	a.4.5.16	124351
1uayA	242	59.68	c.2.1.2	88390
2covD	104	63.56		
1vhsA	175	66.96	d.108.1.1	100698
2afcA	168	69.34	c.50.1.2	126676
2dtrA	226	74.90	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1njrA	284	82.03	c.50.1.2	103858
1qleD	43	86.99	f.23.8.1	43623
1ympA	135	88.07