# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yewA	382	6.551		
1wmxA	205	9.692	b.18.1.24	109418
1lshB	319	9.779	f.7.1.1	74245
1fjgK	129	13.04	c.55.4.1	33733
2p5qA	170	23.58		
2uubE	162	34.33	d.14.1.1,d.50.1.2	139936,139937
1cd31	152	34.38		
1elkA	157	34.63	a.118.9.2	19217
1dpuA	99	34.93	a.4.5.16	16150
1j0pA	108	36.11	a.138.1.1	90743
1z1dA	103	40.08	a.4.5.16	124351
2dtrA	226	44.80	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1fe0A	68	44.91	d.58.17.1	39345
1vhsA	175	46.06	d.108.1.1	100698
2covD	104	48.26		
1spvA	184	50.01	c.50.1.2	98957
1nlqA	108	51.90	b.121.3.1	85853
2fsrA	195	53.21	d.108.1.1	134036
1l6hA	69	53.27	a.52.1.1	77723
1rsgA	516	55.29		
1fjgE	162	56.42	d.14.1.1,d.50.1.2	37553,38789
1ympA	135	56.87		
2qmlA	198	57.72		
2pdoA	144	69.51		
1mkkA	96	73.32	g.17.1.1	79240
2r3aA	300	79.84		
2f8yA	223	82.75		
1ywyA	74	83.03	b.55.2.1	124166
3blnA	143	84.57		
1v1pA	211	85.46	b.40.2.2,d.15.6.1	108268,108269
2zcwA	202	86.19